Hb_023344_110

Information

Type -
Description -
Location Contig23344: 109959-111719
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25790g
description POPTRDRAFT_799513; hypothetical protein
nr
ID XP_012085215.1
description PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
swissprot
ID Q7XJ98
description Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1
trembl
ID B9GRC8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s25790g PE=4 SV=1
Gene Ontology
ID GO:0005768
description xyloglucan galactosyltransferase katamari1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24531: 109711-112181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_110 0.0 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
2 Hb_003849_190 0.09938331 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
3 Hb_002046_060 0.1020668743 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
4 Hb_002217_090 0.1026248982 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
5 Hb_000912_100 0.1085286618 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
6 Hb_143766_030 0.1115125611 - - protein with unknown function [Ricinus communis]
7 Hb_001500_030 0.1116827888 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
8 Hb_008248_020 0.1170228264 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
9 Hb_002876_210 0.1188318848 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
10 Hb_002217_500 0.1262815323 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
11 Hb_001691_040 0.1268959061 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
12 Hb_031089_050 0.1273528967 - - kinase, putative [Ricinus communis]
13 Hb_010661_010 0.1280614834 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
14 Hb_002450_030 0.1300624353 - - ATPP2-A13, putative [Ricinus communis]
15 Hb_000735_140 0.1306061897 - - 3-glucanase family protein [Populus trichocarpa]
16 Hb_001699_170 0.1309781389 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004128_030 0.1314327932 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
18 Hb_003975_010 0.1322680413 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
19 Hb_001474_020 0.133218932 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
20 Hb_000417_300 0.1332843505 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]

Gene co-expression network

sample Hb_023344_110 Hb_023344_110 Hb_003849_190 Hb_003849_190 Hb_023344_110--Hb_003849_190 Hb_002046_060 Hb_002046_060 Hb_023344_110--Hb_002046_060 Hb_002217_090 Hb_002217_090 Hb_023344_110--Hb_002217_090 Hb_000912_100 Hb_000912_100 Hb_023344_110--Hb_000912_100 Hb_143766_030 Hb_143766_030 Hb_023344_110--Hb_143766_030 Hb_001500_030 Hb_001500_030 Hb_023344_110--Hb_001500_030 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_000735_140 Hb_000735_140 Hb_003849_190--Hb_000735_140 Hb_002875_070 Hb_002875_070 Hb_003849_190--Hb_002875_070 Hb_002450_030 Hb_002450_030 Hb_003849_190--Hb_002450_030 Hb_000056_080 Hb_000056_080 Hb_003849_190--Hb_000056_080 Hb_001699_170 Hb_001699_170 Hb_002046_060--Hb_001699_170 Hb_002349_030 Hb_002349_030 Hb_002046_060--Hb_002349_030 Hb_002046_060--Hb_000912_100 Hb_006469_070 Hb_006469_070 Hb_002046_060--Hb_006469_070 Hb_003975_010 Hb_003975_010 Hb_002046_060--Hb_003975_010 Hb_000012_240 Hb_000012_240 Hb_002046_060--Hb_000012_240 Hb_002217_090--Hb_001500_030 Hb_004128_030 Hb_004128_030 Hb_002217_090--Hb_004128_030 Hb_002217_090--Hb_000912_100 Hb_003747_210 Hb_003747_210 Hb_002217_090--Hb_003747_210 Hb_000711_010 Hb_000711_010 Hb_002217_090--Hb_000711_010 Hb_002876_210 Hb_002876_210 Hb_002217_090--Hb_002876_210 Hb_001691_040 Hb_001691_040 Hb_000912_100--Hb_001691_040 Hb_000417_300 Hb_000417_300 Hb_000912_100--Hb_000417_300 Hb_000912_100--Hb_003975_010 Hb_000912_100--Hb_002876_210 Hb_002248_120 Hb_002248_120 Hb_143766_030--Hb_002248_120 Hb_003605_220 Hb_003605_220 Hb_143766_030--Hb_003605_220 Hb_000200_170 Hb_000200_170 Hb_143766_030--Hb_000200_170 Hb_143766_030--Hb_000735_140 Hb_000069_780 Hb_000069_780 Hb_143766_030--Hb_000069_780 Hb_010661_010 Hb_010661_010 Hb_001500_030--Hb_010661_010 Hb_001500_030--Hb_004128_030 Hb_001500_030--Hb_000912_100 Hb_001500_030--Hb_002876_210 Hb_001500_030--Hb_003747_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.43304 23.9414 11.1961 27.1754 2.4074 3.2133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.06202 4.70812 8.12157 5.0477 15.4248

CAGE analysis