Hb_002349_030

Information

Type -
Description -
Location Contig2349: 36593-39625
Sequence    

Annotation

kegg
ID rcu:RCOM_0179580
description hypothetical protein
nr
ID XP_002534301.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T7T2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0179580 PE=4 SV=1
Gene Ontology
ID GO:0005674
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24600: 36716-39588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002349_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000711_010 0.0709874052 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
3 Hb_060094_010 0.0822363041 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
4 Hb_001729_020 0.0881875678 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
5 Hb_000197_180 0.0912027087 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
6 Hb_000012_240 0.0937788218 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
7 Hb_002046_060 0.0952485961 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
8 Hb_003581_130 0.0981284973 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_002965_050 0.0995838666 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
10 Hb_001956_060 0.1023891217 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
11 Hb_002739_120 0.1046208214 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
12 Hb_000979_140 0.1054221924 - - kinase family protein [Populus trichocarpa]
13 Hb_009372_020 0.1066096801 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
14 Hb_002876_210 0.1083774704 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
15 Hb_024714_070 0.1095721376 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
16 Hb_000015_200 0.1108337047 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
17 Hb_000666_010 0.1117637324 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000375_060 0.1122980045 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
19 Hb_000110_300 0.1137083756 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
20 Hb_004375_110 0.1156038229 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]

Gene co-expression network

sample Hb_002349_030 Hb_002349_030 Hb_000711_010 Hb_000711_010 Hb_002349_030--Hb_000711_010 Hb_060094_010 Hb_060094_010 Hb_002349_030--Hb_060094_010 Hb_001729_020 Hb_001729_020 Hb_002349_030--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_002349_030--Hb_000197_180 Hb_000012_240 Hb_000012_240 Hb_002349_030--Hb_000012_240 Hb_002046_060 Hb_002046_060 Hb_002349_030--Hb_002046_060 Hb_002965_050 Hb_002965_050 Hb_000711_010--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_000711_010--Hb_002876_210 Hb_000711_010--Hb_000012_240 Hb_002900_120 Hb_002900_120 Hb_000711_010--Hb_002900_120 Hb_000711_010--Hb_060094_010 Hb_115137_010 Hb_115137_010 Hb_060094_010--Hb_115137_010 Hb_060094_010--Hb_002965_050 Hb_005305_100 Hb_005305_100 Hb_060094_010--Hb_005305_100 Hb_003428_090 Hb_003428_090 Hb_060094_010--Hb_003428_090 Hb_009372_020 Hb_009372_020 Hb_060094_010--Hb_009372_020 Hb_010068_070 Hb_010068_070 Hb_060094_010--Hb_010068_070 Hb_000979_140 Hb_000979_140 Hb_001729_020--Hb_000979_140 Hb_002686_150 Hb_002686_150 Hb_001729_020--Hb_002686_150 Hb_001729_020--Hb_000711_010 Hb_001729_020--Hb_003428_090 Hb_001729_020--Hb_002965_050 Hb_000853_330 Hb_000853_330 Hb_000197_180--Hb_000853_330 Hb_002739_120 Hb_002739_120 Hb_000197_180--Hb_002739_120 Hb_000197_180--Hb_000979_140 Hb_004375_110 Hb_004375_110 Hb_000197_180--Hb_004375_110 Hb_000197_180--Hb_060094_010 Hb_000666_010 Hb_000666_010 Hb_000012_240--Hb_000666_010 Hb_026198_010 Hb_026198_010 Hb_000012_240--Hb_026198_010 Hb_001956_060 Hb_001956_060 Hb_000012_240--Hb_001956_060 Hb_000704_030 Hb_000704_030 Hb_000012_240--Hb_000704_030 Hb_001699_170 Hb_001699_170 Hb_002046_060--Hb_001699_170 Hb_000912_100 Hb_000912_100 Hb_002046_060--Hb_000912_100 Hb_006469_070 Hb_006469_070 Hb_002046_060--Hb_006469_070 Hb_003975_010 Hb_003975_010 Hb_002046_060--Hb_003975_010 Hb_002046_060--Hb_000012_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7068 27.3389 23.913 30.5216 3.15066 4.35157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.59859 7.4185 6.42055 18.254 18.9759

CAGE analysis