Hb_009372_020

Information

Type -
Description -
Location Contig9372: 37462-42932
Sequence    

Annotation

kegg
ID pxb:103926870
description protein transport protein Sec61 subunit alpha-like
nr
ID XP_012074464.1
description PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
swissprot
ID Q54XK2
description Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1
trembl
ID A0A067LMI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13471 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transport protein sec61 subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63016: 37523-42897
cDNA
(Sanger)
(ID:Location)		 001_G13.ab1: 40808-42887 , 030_C02.ab1: 41066-42887 , 046_J16.ab1: 40809-42887

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009372_020 0.0 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
2 Hb_004375_110 0.0668272143 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
3 Hb_060094_010 0.0730395554 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
4 Hb_010068_070 0.0742850923 - - calcium-dependent protein kinase, putative [Ricinus communis]
5 Hb_000111_370 0.0751213066 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
6 Hb_008165_020 0.0768159038 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
7 Hb_003964_110 0.0787075306 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
8 Hb_002686_140 0.0805798644 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
9 Hb_002965_050 0.0815602112 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
10 Hb_000015_200 0.0867830766 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
11 Hb_003599_030 0.0903655353 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
12 Hb_000156_090 0.0904516222 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
13 Hb_033363_010 0.0914450174 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
14 Hb_000705_180 0.0929123384 - - hypothetical protein JCGZ_02923 [Jatropha curcas]
15 Hb_009615_160 0.0931805602 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
16 Hb_002387_040 0.093236947 - - protein transporter, putative [Ricinus communis]
17 Hb_001329_200 0.0935190406 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
18 Hb_003018_030 0.0936767675 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
19 Hb_001328_080 0.0939860844 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
20 Hb_000270_700 0.095169909 - - PREDICTED: protease Do-like 9 [Populus euphratica]

Gene co-expression network

sample Hb_009372_020 Hb_009372_020 Hb_004375_110 Hb_004375_110 Hb_009372_020--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_009372_020--Hb_060094_010 Hb_010068_070 Hb_010068_070 Hb_009372_020--Hb_010068_070 Hb_000111_370 Hb_000111_370 Hb_009372_020--Hb_000111_370 Hb_008165_020 Hb_008165_020 Hb_009372_020--Hb_008165_020 Hb_003964_110 Hb_003964_110 Hb_009372_020--Hb_003964_110 Hb_003777_130 Hb_003777_130 Hb_004375_110--Hb_003777_130 Hb_000664_090 Hb_000664_090 Hb_004375_110--Hb_000664_090 Hb_004375_110--Hb_008165_020 Hb_000015_200 Hb_000015_200 Hb_004375_110--Hb_000015_200 Hb_000034_110 Hb_000034_110 Hb_004375_110--Hb_000034_110 Hb_115137_010 Hb_115137_010 Hb_060094_010--Hb_115137_010 Hb_002965_050 Hb_002965_050 Hb_060094_010--Hb_002965_050 Hb_005305_100 Hb_005305_100 Hb_060094_010--Hb_005305_100 Hb_003428_090 Hb_003428_090 Hb_060094_010--Hb_003428_090 Hb_060094_010--Hb_010068_070 Hb_000890_160 Hb_000890_160 Hb_010068_070--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_010068_070--Hb_000156_090 Hb_033363_010 Hb_033363_010 Hb_010068_070--Hb_033363_010 Hb_010068_070--Hb_002965_050 Hb_000111_370--Hb_033363_010 Hb_000111_370--Hb_000015_200 Hb_000111_370--Hb_004375_110 Hb_000111_370--Hb_003964_110 Hb_004680_010 Hb_004680_010 Hb_000111_370--Hb_004680_010 Hb_000331_100 Hb_000331_100 Hb_008165_020--Hb_000331_100 Hb_009476_120 Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_001414_010 Hb_001414_010 Hb_008165_020--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_000428_030 Hb_000428_030 Hb_008165_020--Hb_000428_030 Hb_008165_020--Hb_005305_100 Hb_158845_060 Hb_158845_060 Hb_003964_110--Hb_158845_060 Hb_003964_110--Hb_008165_020 Hb_000227_320 Hb_000227_320 Hb_003964_110--Hb_000227_320 Hb_003964_110--Hb_000331_100 Hb_003964_110--Hb_001414_010 Hb_000665_260 Hb_000665_260 Hb_003964_110--Hb_000665_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0858 80.3473 56.0015 68.7741 18.2261 20.5107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1373 16.6132 24.6451 48.2848 40.8539

CAGE analysis