Hb_000665_260

Information

Type -
Description -
Location Contig665: 244360-250730
Sequence    

Annotation

kegg
ID rcu:RCOM_0923590
description hypothetical protein
nr
ID XP_012076527.1
description PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07148 PE=4 SV=1
Gene Ontology
ID GO:0035091
description phox domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53226: 247189-249061 , PASA_asmbl_53227: 247702-247956 , PASA_asmbl_53228: 247205-247647 , PASA_asmbl_53229: 249114-250889
cDNA
(Sanger)
(ID:Location)		 028_J18.ab1: 246960-247867 , 049_J24.ab1: 246960-247776

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_260 0.0 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
2 Hb_003964_110 0.076837266 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
3 Hb_000227_320 0.0770796687 - - unnamed protein product [Vitis vinifera]
4 Hb_008165_020 0.0828074889 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
5 Hb_143629_020 0.0832180333 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
6 Hb_013358_060 0.0834300386 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
7 Hb_000331_100 0.0840245543 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
8 Hb_000617_190 0.0842687779 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
9 Hb_000220_120 0.0906072572 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
10 Hb_000428_030 0.0906589957 - - hypothetical protein RCOM_1520720 [Ricinus communis]
11 Hb_006794_020 0.091294443 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
12 Hb_010775_010 0.0913757585 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
13 Hb_000172_360 0.0919460533 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
14 Hb_001414_010 0.09197411 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
15 Hb_158845_060 0.0922896514 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
16 Hb_000856_300 0.0928962165 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
17 Hb_002809_160 0.0954196817 - - PREDICTED: protein FAM63A [Jatropha curcas]
18 Hb_000318_150 0.0969099323 - - RNA-binding protein Nova-1, putative [Ricinus communis]
19 Hb_000260_760 0.09901166 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
20 Hb_060094_010 0.0998457906 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000665_260 Hb_000665_260 Hb_003964_110 Hb_003964_110 Hb_000665_260--Hb_003964_110 Hb_000227_320 Hb_000227_320 Hb_000665_260--Hb_000227_320 Hb_008165_020 Hb_008165_020 Hb_000665_260--Hb_008165_020 Hb_143629_020 Hb_143629_020 Hb_000665_260--Hb_143629_020 Hb_013358_060 Hb_013358_060 Hb_000665_260--Hb_013358_060 Hb_000331_100 Hb_000331_100 Hb_000665_260--Hb_000331_100 Hb_158845_060 Hb_158845_060 Hb_003964_110--Hb_158845_060 Hb_003964_110--Hb_008165_020 Hb_003964_110--Hb_000227_320 Hb_003964_110--Hb_000331_100 Hb_001414_010 Hb_001414_010 Hb_003964_110--Hb_001414_010 Hb_000072_020 Hb_000072_020 Hb_000227_320--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000227_320--Hb_033363_010 Hb_000950_040 Hb_000950_040 Hb_000227_320--Hb_000950_040 Hb_006949_060 Hb_006949_060 Hb_000227_320--Hb_006949_060 Hb_008165_020--Hb_000331_100 Hb_009476_120 Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_008165_020--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_000428_030 Hb_000428_030 Hb_008165_020--Hb_000428_030 Hb_005305_100 Hb_005305_100 Hb_008165_020--Hb_005305_100 Hb_004586_090 Hb_004586_090 Hb_143629_020--Hb_004586_090 Hb_006794_020 Hb_006794_020 Hb_143629_020--Hb_006794_020 Hb_143629_020--Hb_000428_030 Hb_160608_010 Hb_160608_010 Hb_143629_020--Hb_160608_010 Hb_002809_160 Hb_002809_160 Hb_143629_020--Hb_002809_160 Hb_002078_470 Hb_002078_470 Hb_143629_020--Hb_002078_470 Hb_003725_010 Hb_003725_010 Hb_013358_060--Hb_003725_010 Hb_013358_060--Hb_006794_020 Hb_013358_060--Hb_002078_470 Hb_013358_060--Hb_000331_100 Hb_013358_060--Hb_000428_030 Hb_000035_100 Hb_000035_100 Hb_013358_060--Hb_000035_100 Hb_000331_100--Hb_000428_030 Hb_000331_100--Hb_000035_100 Hb_000331_100--Hb_009476_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.71376 17.8329 13.306 12.4652 4.88935 5.51508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.48308 2.95207 2.10645 14.095 11.9548

CAGE analysis