Hb_000227_320

Information

Type -
Description -
Location Contig227: 274092-278621
Sequence    

Annotation

kegg
ID zma:100193479
description uncharacterized LOC100193479
nr
ID CBI26221.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7T6V0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03070 PE=4 SV=1
Gene Ontology
ID GO:0019901
description cyclin-t1-4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23632: 269705-273540 , PASA_asmbl_23633: 269705-278557 , PASA_asmbl_23634: 276347-276859 , PASA_asmbl_23637: 275528-276194 , PASA_asmbl_23638: 274948-275343 , PASA_asmbl_23639: 274538-274683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_320 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_003964_110 0.0728285099 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
3 Hb_000665_260 0.0770796687 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
4 Hb_000072_020 0.081529278 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
5 Hb_033363_010 0.0842836754 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
6 Hb_000950_040 0.0856036745 - - cation-transporting atpase plant, putative [Ricinus communis]
7 Hb_006949_060 0.0861794346 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
8 Hb_001414_010 0.0870897345 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
9 Hb_009078_020 0.0872741831 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
10 Hb_006794_020 0.0896247987 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
11 Hb_005288_050 0.0920017297 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
12 Hb_083078_010 0.0954121366 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
13 Hb_115513_040 0.095569841 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000331_100 0.0958186785 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
15 Hb_000732_230 0.0986694665 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
16 Hb_000015_200 0.0988838786 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
17 Hb_005885_030 0.0997986908 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
18 Hb_010407_030 0.1002530286 - - PREDICTED: casein kinase I-like [Jatropha curcas]
19 Hb_001408_020 0.1014208912 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
20 Hb_008165_020 0.1030887689 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_320 Hb_000227_320 Hb_003964_110 Hb_003964_110 Hb_000227_320--Hb_003964_110 Hb_000665_260 Hb_000665_260 Hb_000227_320--Hb_000665_260 Hb_000072_020 Hb_000072_020 Hb_000227_320--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000227_320--Hb_033363_010 Hb_000950_040 Hb_000950_040 Hb_000227_320--Hb_000950_040 Hb_006949_060 Hb_006949_060 Hb_000227_320--Hb_006949_060 Hb_158845_060 Hb_158845_060 Hb_003964_110--Hb_158845_060 Hb_008165_020 Hb_008165_020 Hb_003964_110--Hb_008165_020 Hb_000331_100 Hb_000331_100 Hb_003964_110--Hb_000331_100 Hb_001414_010 Hb_001414_010 Hb_003964_110--Hb_001414_010 Hb_003964_110--Hb_000665_260 Hb_000665_260--Hb_008165_020 Hb_143629_020 Hb_143629_020 Hb_000665_260--Hb_143629_020 Hb_013358_060 Hb_013358_060 Hb_000665_260--Hb_013358_060 Hb_000665_260--Hb_000331_100 Hb_000072_020--Hb_033363_010 Hb_000072_020--Hb_003964_110 Hb_002235_310 Hb_002235_310 Hb_000072_020--Hb_002235_310 Hb_000805_190 Hb_000805_190 Hb_000072_020--Hb_000805_190 Hb_000133_090 Hb_000133_090 Hb_000072_020--Hb_000133_090 Hb_000009_140 Hb_000009_140 Hb_033363_010--Hb_000009_140 Hb_000111_370 Hb_000111_370 Hb_033363_010--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_033363_010--Hb_009372_020 Hb_005504_030 Hb_005504_030 Hb_033363_010--Hb_005504_030 Hb_000732_230 Hb_000732_230 Hb_000950_040--Hb_000732_230 Hb_052117_010 Hb_052117_010 Hb_000950_040--Hb_052117_010 Hb_000196_010 Hb_000196_010 Hb_000950_040--Hb_000196_010 Hb_000950_040--Hb_006949_060 Hb_115513_040 Hb_115513_040 Hb_000950_040--Hb_115513_040 Hb_010407_030 Hb_010407_030 Hb_006949_060--Hb_010407_030 Hb_132840_030 Hb_132840_030 Hb_006949_060--Hb_132840_030 Hb_001009_150 Hb_001009_150 Hb_006949_060--Hb_001009_150 Hb_002316_170 Hb_002316_170 Hb_006949_060--Hb_002316_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16397 15.8452 11.4875 13.031 3.43033 2.99639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.20411 1.86962 1.7886 11.1268 11.0084

CAGE analysis