Hb_132840_030

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig132840: 23058-26716
Sequence    

Annotation

kegg
ID pmum:103342352
description protein CCA1
nr
ID AEA50874.1
description lhy1 [Populus tremula]
swissprot
ID F4K5X6
description Protein REVEILLE 2 OS=Arabidopsis thaliana GN=RVE2 PE=2 SV=1
trembl
ID F2Y9H7
description Lhy1 (Fragment) OS=Populus tremula GN=lhy1 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeodomain-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09331: 13387-26581 , PASA_asmbl_09333: 13387-26581 , PASA_asmbl_09334: 13387-26581 , PASA_asmbl_09335: 13387-26581 , PASA_asmbl_09336: 13387-26581 , PASA_asmbl_09337: 13387-26581 , PASA_asmbl_09338: 13387-26581 , PASA_asmbl_09339: 13387-26581 , PASA_asmbl_09340: 13387-26581 , PASA_asmbl_09341: 13387-26581 , PASA_asmbl_09342: 13387-26581 , PASA_asmbl_09343: 13387-26581 , PASA_asmbl_09344: 25143-25360 , PASA_asmbl_09348: 23088-23483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_030 0.0 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
2 Hb_005588_120 0.085959422 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006949_060 0.0943293851 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
4 Hb_001514_240 0.10238029 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
5 Hb_026698_020 0.1062595775 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
6 Hb_000227_320 0.1078263536 - - unnamed protein product [Vitis vinifera]
7 Hb_001404_090 0.1110816676 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
8 Hb_000416_060 0.1131848351 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
9 Hb_000072_020 0.1134847424 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
10 Hb_002968_030 0.1161047752 - - Pectinesterase-1 precursor, putative [Ricinus communis]
11 Hb_033234_010 0.1187621723 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
12 Hb_003581_130 0.1195899264 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_004129_010 0.1201207086 - - aspartate aminotransferase, putative [Ricinus communis]
14 Hb_000800_010 0.1202435269 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
15 Hb_033363_010 0.120853343 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
16 Hb_002849_070 0.1218369636 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
17 Hb_042202_020 0.1228807319 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
18 Hb_001699_170 0.1259910628 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002349_030 0.1280130197 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001059_060 0.1285728476 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_132840_030 Hb_132840_030 Hb_005588_120 Hb_005588_120 Hb_132840_030--Hb_005588_120 Hb_006949_060 Hb_006949_060 Hb_132840_030--Hb_006949_060 Hb_001514_240 Hb_001514_240 Hb_132840_030--Hb_001514_240 Hb_026698_020 Hb_026698_020 Hb_132840_030--Hb_026698_020 Hb_000227_320 Hb_000227_320 Hb_132840_030--Hb_000227_320 Hb_001404_090 Hb_001404_090 Hb_132840_030--Hb_001404_090 Hb_004129_010 Hb_004129_010 Hb_005588_120--Hb_004129_010 Hb_000416_060 Hb_000416_060 Hb_005588_120--Hb_000416_060 Hb_000256_160 Hb_000256_160 Hb_005588_120--Hb_000256_160 Hb_001235_130 Hb_001235_130 Hb_005588_120--Hb_001235_130 Hb_000340_220 Hb_000340_220 Hb_005588_120--Hb_000340_220 Hb_010407_030 Hb_010407_030 Hb_006949_060--Hb_010407_030 Hb_006949_060--Hb_000227_320 Hb_000950_040 Hb_000950_040 Hb_006949_060--Hb_000950_040 Hb_001009_150 Hb_001009_150 Hb_006949_060--Hb_001009_150 Hb_002316_170 Hb_002316_170 Hb_006949_060--Hb_002316_170 Hb_001514_240--Hb_026698_020 Hb_002259_220 Hb_002259_220 Hb_001514_240--Hb_002259_220 Hb_009449_100 Hb_009449_100 Hb_001514_240--Hb_009449_100 Hb_001499_070 Hb_001499_070 Hb_001514_240--Hb_001499_070 Hb_013968_010 Hb_013968_010 Hb_001514_240--Hb_013968_010 Hb_187005_010 Hb_187005_010 Hb_001514_240--Hb_187005_010 Hb_000417_410 Hb_000417_410 Hb_026698_020--Hb_000417_410 Hb_026698_020--Hb_009449_100 Hb_002888_040 Hb_002888_040 Hb_026698_020--Hb_002888_040 Hb_001195_230 Hb_001195_230 Hb_026698_020--Hb_001195_230 Hb_003964_110 Hb_003964_110 Hb_000227_320--Hb_003964_110 Hb_000665_260 Hb_000665_260 Hb_000227_320--Hb_000665_260 Hb_000072_020 Hb_000072_020 Hb_000227_320--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000227_320--Hb_033363_010 Hb_000227_320--Hb_000950_040 Hb_001404_090--Hb_000416_060 Hb_000094_150 Hb_000094_150 Hb_001404_090--Hb_000094_150 Hb_001404_090--Hb_005588_120 Hb_001307_200 Hb_001307_200 Hb_001404_090--Hb_001307_200 Hb_073973_020 Hb_073973_020 Hb_001404_090--Hb_073973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3629 134.15 81.6183 123.164 9.44296 14.6995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5007 14.5909 14.8884 80.8613 93.3838

CAGE analysis