Hb_001009_150

Information

Type -
Description -
Location Contig1009: 91544-95814
Sequence    

Annotation

kegg
ID sot:102592694
description glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like
nr
ID KHG04963.1
description Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
swissprot
ID P26520
description Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1
trembl
ID A0A0B0MS63
description Glyceraldehyde-3-phosphate dehydrogenase OS=Gossypium arboreum GN=F383_30332 PE=3 SV=1
Gene Ontology
ID GO:0000166
description glyceraldehyde-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00532: 91510-95764 , PASA_asmbl_00533: 91548-124622 , PASA_asmbl_00535: 92449-92781
cDNA
(Sanger)
(ID:Location)		 020_G20.ab1: 93322-95559 , 031_O02.ab1: 93337-95555

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_150 0.0 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
2 Hb_002739_120 0.082458819 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
3 Hb_010407_030 0.0911678378 - - PREDICTED: casein kinase I-like [Jatropha curcas]
4 Hb_001195_420 0.094419915 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
5 Hb_000318_040 0.0946913323 - - hypothetical protein JCGZ_04877 [Jatropha curcas]
6 Hb_006949_060 0.0995443354 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
7 Hb_028077_020 0.1010162531 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000134_120 0.1049762244 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
9 Hb_000203_270 0.1059132596 - - alpha-xylosidase, putative [Ricinus communis]
10 Hb_003430_080 0.1060367569 - - zinc finger protein, putative [Ricinus communis]
11 Hb_001675_320 0.1082708265 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
12 Hb_000012_400 0.1082967233 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
13 Hb_000363_180 0.1084460482 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
14 Hb_002316_170 0.1085502652 - - purine permease, putative [Ricinus communis]
15 Hb_000950_040 0.1123273835 - - cation-transporting atpase plant, putative [Ricinus communis]
16 Hb_158845_060 0.1124977166 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
17 Hb_001103_090 0.1146881914 - - PREDICTED: patellin-3 [Populus euphratica]
18 Hb_000227_320 0.1153126942 - - unnamed protein product [Vitis vinifera]
19 Hb_000220_080 0.1158402559 - - kinase, putative [Ricinus communis]
20 Hb_021977_010 0.1177773958 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001009_150 Hb_001009_150 Hb_002739_120 Hb_002739_120 Hb_001009_150--Hb_002739_120 Hb_010407_030 Hb_010407_030 Hb_001009_150--Hb_010407_030 Hb_001195_420 Hb_001195_420 Hb_001009_150--Hb_001195_420 Hb_000318_040 Hb_000318_040 Hb_001009_150--Hb_000318_040 Hb_006949_060 Hb_006949_060 Hb_001009_150--Hb_006949_060 Hb_028077_020 Hb_028077_020 Hb_001009_150--Hb_028077_020 Hb_001250_050 Hb_001250_050 Hb_002739_120--Hb_001250_050 Hb_001085_080 Hb_001085_080 Hb_002739_120--Hb_001085_080 Hb_003777_030 Hb_003777_030 Hb_002739_120--Hb_003777_030 Hb_000418_020 Hb_000418_020 Hb_002739_120--Hb_000418_020 Hb_000197_180 Hb_000197_180 Hb_002739_120--Hb_000197_180 Hb_010407_030--Hb_006949_060 Hb_010381_020 Hb_010381_020 Hb_010407_030--Hb_010381_020 Hb_010407_030--Hb_002739_120 Hb_005854_040 Hb_005854_040 Hb_010407_030--Hb_005854_040 Hb_009078_020 Hb_009078_020 Hb_010407_030--Hb_009078_020 Hb_003430_080 Hb_003430_080 Hb_001195_420--Hb_003430_080 Hb_000363_180 Hb_000363_180 Hb_001195_420--Hb_000363_180 Hb_005694_180 Hb_005694_180 Hb_001195_420--Hb_005694_180 Hb_000012_400 Hb_000012_400 Hb_001195_420--Hb_000012_400 Hb_001221_390 Hb_001221_390 Hb_001195_420--Hb_001221_390 Hb_001558_040 Hb_001558_040 Hb_000318_040--Hb_001558_040 Hb_002995_040 Hb_002995_040 Hb_000318_040--Hb_002995_040 Hb_001103_090 Hb_001103_090 Hb_000318_040--Hb_001103_090 Hb_004355_040 Hb_004355_040 Hb_000318_040--Hb_004355_040 Hb_007137_050 Hb_007137_050 Hb_000318_040--Hb_007137_050 Hb_000227_320 Hb_000227_320 Hb_006949_060--Hb_000227_320 Hb_132840_030 Hb_132840_030 Hb_006949_060--Hb_132840_030 Hb_000950_040 Hb_000950_040 Hb_006949_060--Hb_000950_040 Hb_002316_170 Hb_002316_170 Hb_006949_060--Hb_002316_170 Hb_028077_020--Hb_001103_090 Hb_001675_320 Hb_001675_320 Hb_028077_020--Hb_001675_320 Hb_000705_180 Hb_000705_180 Hb_028077_020--Hb_000705_180 Hb_001097_040 Hb_001097_040 Hb_028077_020--Hb_001097_040 Hb_005970_010 Hb_005970_010 Hb_028077_020--Hb_005970_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.681 355.553 343.596 609.986 121.608 95.4069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.8229 45.6416 66.5293 322.38 248.047

CAGE analysis