Hb_000318_040

Information

Type -
Description -
Location Contig318: 32123-36948
Sequence    

Annotation

kegg
ID rcu:RCOM_0774230
description Armadillo repeat-containing protein, putative
nr
ID KDP38234.1
description hypothetical protein JCGZ_04877 [Jatropha curcas]
swissprot
ID Q6NXE6
description Armadillo repeat-containing protein 6 OS=Homo sapiens GN=ARMC6 PE=1 SV=2
trembl
ID A0A067L2E5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04877 PE=4 SV=1
Gene Ontology
ID GO:0008270
description armadillo repeat-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33488: 32109-37096 , PASA_asmbl_33489: 34016-34232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_040 0.0 - - hypothetical protein JCGZ_04877 [Jatropha curcas]
2 Hb_001558_040 0.0940931608 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
3 Hb_001009_150 0.0946913323 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
4 Hb_002995_040 0.1038793869 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
5 Hb_001103_090 0.1125127887 - - PREDICTED: patellin-3 [Populus euphratica]
6 Hb_004355_040 0.1134749352 - - epoxide hydrolase, putative [Ricinus communis]
7 Hb_007137_050 0.1149164698 - - Uncharacterized protein isoform 1 [Theobroma cacao]
8 Hb_002808_020 0.1150456201 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
9 Hb_158845_060 0.1161889363 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
10 Hb_002316_170 0.1164955631 - - purine permease, putative [Ricinus communis]
11 Hb_000588_080 0.1167351395 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
12 Hb_005062_110 0.1174327257 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
13 Hb_012180_010 0.1194419271 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
14 Hb_001159_030 0.1204200995 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
15 Hb_003998_010 0.1204557378 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
16 Hb_000098_050 0.1208939275 - - BnaCnng11900D [Brassica napus]
17 Hb_002739_120 0.1210491991 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
18 Hb_010407_030 0.1213642244 - - PREDICTED: casein kinase I-like [Jatropha curcas]
19 Hb_000085_260 0.1220412042 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
20 Hb_021977_010 0.123027431 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000318_040 Hb_000318_040 Hb_001558_040 Hb_001558_040 Hb_000318_040--Hb_001558_040 Hb_001009_150 Hb_001009_150 Hb_000318_040--Hb_001009_150 Hb_002995_040 Hb_002995_040 Hb_000318_040--Hb_002995_040 Hb_001103_090 Hb_001103_090 Hb_000318_040--Hb_001103_090 Hb_004355_040 Hb_004355_040 Hb_000318_040--Hb_004355_040 Hb_007137_050 Hb_007137_050 Hb_000318_040--Hb_007137_050 Hb_001307_240 Hb_001307_240 Hb_001558_040--Hb_001307_240 Hb_002007_260 Hb_002007_260 Hb_001558_040--Hb_002007_260 Hb_000579_130 Hb_000579_130 Hb_001558_040--Hb_000579_130 Hb_001085_080 Hb_001085_080 Hb_001558_040--Hb_001085_080 Hb_000020_160 Hb_000020_160 Hb_001558_040--Hb_000020_160 Hb_158845_060 Hb_158845_060 Hb_001558_040--Hb_158845_060 Hb_002739_120 Hb_002739_120 Hb_001009_150--Hb_002739_120 Hb_010407_030 Hb_010407_030 Hb_001009_150--Hb_010407_030 Hb_001195_420 Hb_001195_420 Hb_001009_150--Hb_001195_420 Hb_006949_060 Hb_006949_060 Hb_001009_150--Hb_006949_060 Hb_028077_020 Hb_028077_020 Hb_001009_150--Hb_028077_020 Hb_000334_260 Hb_000334_260 Hb_002995_040--Hb_000334_260 Hb_002995_040--Hb_001558_040 Hb_002995_040--Hb_000579_130 Hb_002995_040--Hb_001307_240 Hb_004450_070 Hb_004450_070 Hb_002995_040--Hb_004450_070 Hb_000085_450 Hb_000085_450 Hb_002995_040--Hb_000085_450 Hb_001675_320 Hb_001675_320 Hb_001103_090--Hb_001675_320 Hb_001226_110 Hb_001226_110 Hb_001103_090--Hb_001226_110 Hb_000205_280 Hb_000205_280 Hb_001103_090--Hb_000205_280 Hb_001103_090--Hb_000020_160 Hb_001259_120 Hb_001259_120 Hb_001103_090--Hb_001259_120 Hb_000260_780 Hb_000260_780 Hb_001103_090--Hb_000260_780 Hb_000630_030 Hb_000630_030 Hb_004355_040--Hb_000630_030 Hb_000580_030 Hb_000580_030 Hb_004355_040--Hb_000580_030 Hb_000413_070 Hb_000413_070 Hb_004355_040--Hb_000413_070 Hb_004355_040--Hb_001103_090 Hb_004355_040--Hb_001558_040 Hb_188063_050 Hb_188063_050 Hb_007137_050--Hb_188063_050 Hb_007137_050--Hb_000085_450 Hb_001097_040 Hb_001097_040 Hb_007137_050--Hb_001097_040 Hb_010042_030 Hb_010042_030 Hb_007137_050--Hb_010042_030 Hb_002740_090 Hb_002740_090 Hb_007137_050--Hb_002740_090 Hb_007137_050--Hb_000579_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7349 24.3484 21.2944 37.7022 9.82571 12.2707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0994 2.79486 2.78292 24.0833 17.9667

CAGE analysis