Hb_000334_260

Information

Type -
Description -
Location Contig334: 220721-227038
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06530g
description carotenoid cleavage dioxygenase 1 family protein
nr
ID ADN65332.1
description carotenoid cleavage dioxygenase 1 [Manihot esculenta]
swissprot
ID O65572
description Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2
trembl
ID E2DQG6
description Carotenoid cleavage dioxygenase 1 OS=Manihot esculenta GN=CCD1 PE=2 SV=1
Gene Ontology
ID GO:0005774
description carotenoid (9 )-cleavage dioxygenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_260 0.0 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
2 Hb_002995_040 0.0708963265 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
3 Hb_001160_070 0.0793923478 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
4 Hb_001497_060 0.0882311477 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
5 Hb_007747_170 0.0914684329 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
6 Hb_001307_240 0.0971471771 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
7 Hb_002874_090 0.0992939665 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
8 Hb_006829_100 0.1000422164 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001552_030 0.1008655199 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
10 Hb_003055_040 0.1038863094 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
11 Hb_019840_030 0.1039014302 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
12 Hb_013358_050 0.1047471091 - - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative [Ricinus communis]
13 Hb_004837_280 0.1061672993 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
14 Hb_004450_070 0.1074862176 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
15 Hb_075315_010 0.1077243151 - - ornithine aminotransferase [Camellia sinensis]
16 Hb_002596_060 0.1082525338 - - conserved hypothetical protein [Ricinus communis]
17 Hb_083799_010 0.1084140179 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_179306_020 0.1117615487 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
19 Hb_003912_070 0.1120284057 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
20 Hb_003020_100 0.1120880642 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]

Gene co-expression network

sample Hb_000334_260 Hb_000334_260 Hb_002995_040 Hb_002995_040 Hb_000334_260--Hb_002995_040 Hb_001160_070 Hb_001160_070 Hb_000334_260--Hb_001160_070 Hb_001497_060 Hb_001497_060 Hb_000334_260--Hb_001497_060 Hb_007747_170 Hb_007747_170 Hb_000334_260--Hb_007747_170 Hb_001307_240 Hb_001307_240 Hb_000334_260--Hb_001307_240 Hb_002874_090 Hb_002874_090 Hb_000334_260--Hb_002874_090 Hb_001558_040 Hb_001558_040 Hb_002995_040--Hb_001558_040 Hb_000579_130 Hb_000579_130 Hb_002995_040--Hb_000579_130 Hb_002995_040--Hb_001307_240 Hb_004450_070 Hb_004450_070 Hb_002995_040--Hb_004450_070 Hb_000085_450 Hb_000085_450 Hb_002995_040--Hb_000085_450 Hb_001160_070--Hb_002995_040 Hb_001160_070--Hb_001497_060 Hb_083799_010 Hb_083799_010 Hb_001160_070--Hb_083799_010 Hb_001160_070--Hb_001307_240 Hb_002836_100 Hb_002836_100 Hb_001160_070--Hb_002836_100 Hb_075315_010 Hb_075315_010 Hb_001497_060--Hb_075315_010 Hb_000723_010 Hb_000723_010 Hb_001497_060--Hb_000723_010 Hb_004837_280 Hb_004837_280 Hb_001497_060--Hb_004837_280 Hb_013358_050 Hb_013358_050 Hb_001497_060--Hb_013358_050 Hb_019840_030 Hb_019840_030 Hb_007747_170--Hb_019840_030 Hb_007747_170--Hb_004450_070 Hb_000608_230 Hb_000608_230 Hb_007747_170--Hb_000608_230 Hb_007245_020 Hb_007245_020 Hb_007747_170--Hb_007245_020 Hb_000331_580 Hb_000331_580 Hb_007747_170--Hb_000331_580 Hb_002027_190 Hb_002027_190 Hb_007747_170--Hb_002027_190 Hb_001307_240--Hb_001558_040 Hb_001307_240--Hb_004837_280 Hb_002007_260 Hb_002007_260 Hb_001307_240--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001307_240--Hb_001552_030 Hb_001085_290 Hb_001085_290 Hb_001307_240--Hb_001085_290 Hb_000017_230 Hb_000017_230 Hb_001307_240--Hb_000017_230 Hb_002045_250 Hb_002045_250 Hb_002874_090--Hb_002045_250 Hb_092000_010 Hb_092000_010 Hb_002874_090--Hb_092000_010 Hb_004544_040 Hb_004544_040 Hb_002874_090--Hb_004544_040 Hb_007062_030 Hb_007062_030 Hb_002874_090--Hb_007062_030 Hb_002874_090--Hb_001552_030 Hb_002874_090--Hb_000017_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.65772 5.82564 4.46117 7.27039 2.42416 5.03603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.30335 0.992301 2.40007 9.18125 4.30619

CAGE analysis