Hb_000723_010

Information

Type -
Description -
Location Contig723: 24076-31481
Sequence    

Annotation

kegg
ID rcu:RCOM_1354650
description multidrug resistance protein 1, 2, putative (EC:3.6.3.30 3.6.3.44)
nr
ID AIU41628.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9ZR72
description ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1
trembl
ID A0A097P9Q2
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB1 PE=2 SV=1
Gene Ontology
ID GO:0009506
description abc transporter b family member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55743: 24408-31182 , PASA_asmbl_55744: 24379-31182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_010 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_069619_010 0.087209692 - - Aspartic proteinase precursor, putative [Ricinus communis]
3 Hb_001497_060 0.0986203312 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
4 Hb_000674_010 0.1028686077 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
5 Hb_003058_200 0.1042720909 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
6 Hb_075315_010 0.1064511414 - - ornithine aminotransferase [Camellia sinensis]
7 Hb_020805_180 0.1197936147 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
8 Hb_000152_700 0.1232821718 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
9 Hb_004450_070 0.1250261039 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
10 Hb_007747_170 0.1251682827 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
11 Hb_000099_030 0.1271119999 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
12 Hb_002851_010 0.1279357041 - - sugar transporter, putative [Ricinus communis]
13 Hb_002477_040 0.1282110683 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]
14 Hb_021297_020 0.1300552624 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
15 Hb_002213_090 0.1303114779 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
16 Hb_004657_030 0.1306513066 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
17 Hb_000334_260 0.1306865057 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
18 Hb_000649_060 0.1315601514 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
19 Hb_002072_010 0.1333228357 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000552_100 0.1346795585 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000723_010 Hb_000723_010 Hb_069619_010 Hb_069619_010 Hb_000723_010--Hb_069619_010 Hb_001497_060 Hb_001497_060 Hb_000723_010--Hb_001497_060 Hb_000674_010 Hb_000674_010 Hb_000723_010--Hb_000674_010 Hb_003058_200 Hb_003058_200 Hb_000723_010--Hb_003058_200 Hb_075315_010 Hb_075315_010 Hb_000723_010--Hb_075315_010 Hb_020805_180 Hb_020805_180 Hb_000723_010--Hb_020805_180 Hb_002851_010 Hb_002851_010 Hb_069619_010--Hb_002851_010 Hb_069619_010--Hb_003058_200 Hb_000152_700 Hb_000152_700 Hb_069619_010--Hb_000152_700 Hb_069619_010--Hb_000674_010 Hb_004094_020 Hb_004094_020 Hb_069619_010--Hb_004094_020 Hb_000334_260 Hb_000334_260 Hb_001497_060--Hb_000334_260 Hb_001497_060--Hb_075315_010 Hb_001160_070 Hb_001160_070 Hb_001497_060--Hb_001160_070 Hb_004837_280 Hb_004837_280 Hb_001497_060--Hb_004837_280 Hb_013358_050 Hb_013358_050 Hb_001497_060--Hb_013358_050 Hb_000674_010--Hb_003058_200 Hb_003125_180 Hb_003125_180 Hb_000674_010--Hb_003125_180 Hb_002072_010 Hb_002072_010 Hb_000674_010--Hb_002072_010 Hb_021297_020 Hb_021297_020 Hb_000674_010--Hb_021297_020 Hb_000674_010--Hb_002851_010 Hb_005000_090 Hb_005000_090 Hb_000674_010--Hb_005000_090 Hb_003058_200--Hb_002072_010 Hb_000019_170 Hb_000019_170 Hb_003058_200--Hb_000019_170 Hb_003058_200--Hb_021297_020 Hb_003058_200--Hb_002851_010 Hb_003058_200--Hb_003125_180 Hb_083799_010 Hb_083799_010 Hb_075315_010--Hb_083799_010 Hb_005081_020 Hb_005081_020 Hb_075315_010--Hb_005081_020 Hb_039946_050 Hb_039946_050 Hb_075315_010--Hb_039946_050 Hb_004450_070 Hb_004450_070 Hb_075315_010--Hb_004450_070 Hb_007747_170 Hb_007747_170 Hb_075315_010--Hb_007747_170 Hb_001105_160 Hb_001105_160 Hb_075315_010--Hb_001105_160 Hb_080147_050 Hb_080147_050 Hb_020805_180--Hb_080147_050 Hb_000321_090 Hb_000321_090 Hb_020805_180--Hb_000321_090 Hb_020805_180--Hb_002851_010 Hb_000649_060 Hb_000649_060 Hb_020805_180--Hb_000649_060 Hb_000157_070 Hb_000157_070 Hb_020805_180--Hb_000157_070 Hb_002027_190 Hb_002027_190 Hb_020805_180--Hb_002027_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5267 22.357 12.108 42.6121 16.7779 21.9845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3765 4.55668 8.4813 58.6306 33.5495

CAGE analysis