Hb_002072_010

Information

Type -
Description -
Location Contig2072: 32178-33868
Sequence    

Annotation

kegg
ID rcu:RCOM_1588080
description hypothetical protein
nr
ID XP_002510123.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9STX2
description 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Arabidopsis thaliana GN=VEP1 PE=1 SV=1
trembl
ID B9R730
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1588080 PE=4 SV=1
Gene Ontology
ID GO:0005829
description 3-oxo-delta( )-steroid 5-beta-reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21361: 32130-33819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002072_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_030565_110 0.0728092536 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
3 Hb_003058_200 0.0758968731 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
4 Hb_000674_010 0.0826269569 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
5 Hb_000244_260 0.0905447205 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
6 Hb_005000_090 0.0955019321 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
7 Hb_000019_170 0.0970706135 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
8 Hb_021297_020 0.1003598972 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
9 Hb_002367_110 0.1008903236 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
10 Hb_000254_070 0.1021677363 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
11 Hb_000000_120 0.1027491101 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
12 Hb_102763_010 0.102768747 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
13 Hb_010381_020 0.1061630129 - - Endosomal P24A protein precursor, putative [Ricinus communis]
14 Hb_003125_180 0.1092166039 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
15 Hb_023765_010 0.1115808109 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_000003_310 0.111957524 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
17 Hb_069619_010 0.1132005516 - - Aspartic proteinase precursor, putative [Ricinus communis]
18 Hb_001159_030 0.1144035116 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
19 Hb_003371_190 0.1151088029 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
20 Hb_000997_070 0.116345666 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002072_010 Hb_002072_010 Hb_030565_110 Hb_030565_110 Hb_002072_010--Hb_030565_110 Hb_003058_200 Hb_003058_200 Hb_002072_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_002072_010--Hb_000674_010 Hb_000244_260 Hb_000244_260 Hb_002072_010--Hb_000244_260 Hb_005000_090 Hb_005000_090 Hb_002072_010--Hb_005000_090 Hb_000019_170 Hb_000019_170 Hb_002072_010--Hb_000019_170 Hb_003371_190 Hb_003371_190 Hb_030565_110--Hb_003371_190 Hb_000003_310 Hb_000003_310 Hb_030565_110--Hb_000003_310 Hb_030565_110--Hb_000244_260 Hb_000254_070 Hb_000254_070 Hb_030565_110--Hb_000254_070 Hb_002367_110 Hb_002367_110 Hb_030565_110--Hb_002367_110 Hb_003058_200--Hb_000674_010 Hb_003058_200--Hb_000019_170 Hb_021297_020 Hb_021297_020 Hb_003058_200--Hb_021297_020 Hb_002851_010 Hb_002851_010 Hb_003058_200--Hb_002851_010 Hb_003125_180 Hb_003125_180 Hb_003058_200--Hb_003125_180 Hb_000674_010--Hb_003125_180 Hb_000674_010--Hb_021297_020 Hb_000674_010--Hb_002851_010 Hb_000674_010--Hb_005000_090 Hb_000244_260--Hb_000254_070 Hb_011310_050 Hb_011310_050 Hb_000244_260--Hb_011310_050 Hb_000244_260--Hb_003058_200 Hb_002026_070 Hb_002026_070 Hb_000244_260--Hb_002026_070 Hb_102763_010 Hb_102763_010 Hb_005000_090--Hb_102763_010 Hb_001366_270 Hb_001366_270 Hb_005000_090--Hb_001366_270 Hb_009476_120 Hb_009476_120 Hb_005000_090--Hb_009476_120 Hb_001998_220 Hb_001998_220 Hb_005000_090--Hb_001998_220 Hb_000492_080 Hb_000492_080 Hb_005000_090--Hb_000492_080 Hb_000019_170--Hb_003125_180 Hb_000019_170--Hb_102763_010 Hb_000823_010 Hb_000823_010 Hb_000019_170--Hb_000823_010 Hb_000157_070 Hb_000157_070 Hb_000019_170--Hb_000157_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.9389 74.603 51.7234 159.869 46.2537 43.8702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3869 10.0312 21.0679 120.917 100.118

CAGE analysis