Hb_003371_190

Information

Type -
Description -
Location Contig3371: 109911-114867
Sequence    

Annotation

kegg
ID vvi:100252705
description beta-glucosidase 12
nr
ID XP_012065488.1
description PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
swissprot
ID Q9LU02
description Beta-glucosidase 13 OS=Arabidopsis thaliana GN=BGLU13 PE=2 SV=1
trembl
ID A0A067LGV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16701 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35298: 112464-113943 , PASA_asmbl_35299: 113944-114800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_190 0.0 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
2 Hb_030565_110 0.0952537718 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
3 Hb_000679_040 0.1090074733 - - Cellulose synthase 1 [Theobroma cacao]
4 Hb_002072_010 0.1151088029 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010381_020 0.1161588877 - - Endosomal P24A protein precursor, putative [Ricinus communis]
6 Hb_009535_030 0.1189456107 - - CP2 [Hevea brasiliensis]
7 Hb_000254_070 0.1204839699 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
8 Hb_011310_050 0.123334118 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
9 Hb_102763_010 0.1254204888 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
10 Hb_007317_020 0.1257099373 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
11 Hb_000019_170 0.1258036264 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
12 Hb_003006_080 0.1261066512 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
13 Hb_000590_070 0.1262681689 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
14 Hb_000244_260 0.1271196528 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
15 Hb_001195_310 0.1274222804 - - ATP binding protein, putative [Ricinus communis]
16 Hb_039074_010 0.1294254575 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_000167_040 0.1312137204 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
18 Hb_001105_130 0.1325799445 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
19 Hb_001247_270 0.1381290541 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
20 Hb_005181_060 0.1391419227 - - ATP-citrate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003371_190 Hb_003371_190 Hb_030565_110 Hb_030565_110 Hb_003371_190--Hb_030565_110 Hb_000679_040 Hb_000679_040 Hb_003371_190--Hb_000679_040 Hb_002072_010 Hb_002072_010 Hb_003371_190--Hb_002072_010 Hb_010381_020 Hb_010381_020 Hb_003371_190--Hb_010381_020 Hb_009535_030 Hb_009535_030 Hb_003371_190--Hb_009535_030 Hb_000254_070 Hb_000254_070 Hb_003371_190--Hb_000254_070 Hb_030565_110--Hb_002072_010 Hb_000003_310 Hb_000003_310 Hb_030565_110--Hb_000003_310 Hb_000244_260 Hb_000244_260 Hb_030565_110--Hb_000244_260 Hb_030565_110--Hb_000254_070 Hb_002367_110 Hb_002367_110 Hb_030565_110--Hb_002367_110 Hb_001216_110 Hb_001216_110 Hb_000679_040--Hb_001216_110 Hb_011310_050 Hb_011310_050 Hb_000679_040--Hb_011310_050 Hb_001195_310 Hb_001195_310 Hb_000679_040--Hb_001195_310 Hb_001969_140 Hb_001969_140 Hb_000679_040--Hb_001969_140 Hb_000679_040--Hb_000254_070 Hb_021576_070 Hb_021576_070 Hb_000679_040--Hb_021576_070 Hb_003058_200 Hb_003058_200 Hb_002072_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_002072_010--Hb_000674_010 Hb_002072_010--Hb_000244_260 Hb_005000_090 Hb_005000_090 Hb_002072_010--Hb_005000_090 Hb_000019_170 Hb_000019_170 Hb_002072_010--Hb_000019_170 Hb_102763_010 Hb_102763_010 Hb_010381_020--Hb_102763_010 Hb_010407_030 Hb_010407_030 Hb_010381_020--Hb_010407_030 Hb_010381_020--Hb_005000_090 Hb_000167_040 Hb_000167_040 Hb_010381_020--Hb_000167_040 Hb_000997_070 Hb_000997_070 Hb_010381_020--Hb_000997_070 Hb_002311_130 Hb_002311_130 Hb_010381_020--Hb_002311_130 Hb_029584_100 Hb_029584_100 Hb_009535_030--Hb_029584_100 Hb_004030_060 Hb_004030_060 Hb_009535_030--Hb_004030_060 Hb_001235_130 Hb_001235_130 Hb_009535_030--Hb_001235_130 Hb_001247_270 Hb_001247_270 Hb_009535_030--Hb_001247_270 Hb_007229_050 Hb_007229_050 Hb_009535_030--Hb_007229_050 Hb_001473_170 Hb_001473_170 Hb_009535_030--Hb_001473_170 Hb_000254_070--Hb_000003_310 Hb_000701_030 Hb_000701_030 Hb_000254_070--Hb_000701_030 Hb_007317_020 Hb_007317_020 Hb_000254_070--Hb_007317_020 Hb_000418_020 Hb_000418_020 Hb_000254_070--Hb_000418_020 Hb_000494_030 Hb_000494_030 Hb_000254_070--Hb_000494_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35542 7.59273 5.59289 22.3006 4.08842 2.56448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.96824 0.839948 2.36494 14.5138 12.6811

CAGE analysis