Hb_002367_110

Information

Type -
Description -
Location Contig2367: 119240-121645
Sequence    

Annotation

kegg
ID cit:102607276
description CAD; carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase (EC:2.1.3.2)
nr
ID XP_011088206.1
description PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
swissprot
ID Q2KNL5
description Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1
trembl
ID Q1HGA8
description Putative cinnamyl alcohol dehydrogenase OS=Linum usitatissimum GN=CAD PE=2 SV=1
Gene Ontology
ID GO:0008270
description cinnamyl alcohol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24761: 119410-121595
cDNA
(Sanger)
(ID:Location)		 011_K09.ab1: 119415-120298 , 032_E11.ab1: 119406-120281 , 051_G05.ab1: 119410-120419

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002367_110 0.0 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
2 Hb_002072_010 0.1008903236 - - conserved hypothetical protein [Ricinus communis]
3 Hb_031931_020 0.109708443 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
4 Hb_030565_110 0.1106480367 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
5 Hb_000003_310 0.1128462102 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
6 Hb_023765_010 0.1161832624 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_000674_010 0.1252827999 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
8 Hb_003894_010 0.1263503154 - - unnamed protein product [Vitis vinifera]
9 Hb_000997_070 0.1292440167 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
10 Hb_003052_030 0.1342387864 - - 6-phosphogluconate dehydrogenase family protein isoform 1 [Theobroma cacao]
11 Hb_033642_060 0.1381846908 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
12 Hb_000254_070 0.1389339495 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
13 Hb_000679_040 0.1390778991 - - Cellulose synthase 1 [Theobroma cacao]
14 Hb_000244_260 0.139283557 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
15 Hb_020586_010 0.1403191031 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
16 Hb_028077_020 0.1417682843 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001006_270 0.1423238921 - - peptide transporter, putative [Ricinus communis]
18 Hb_183086_030 0.1450523972 - - GTPase-activating protein GYP7 [Gossypium arboreum]
19 Hb_005062_110 0.1452169453 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
20 Hb_000265_140 0.146568112 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]

Gene co-expression network

sample Hb_002367_110 Hb_002367_110 Hb_002072_010 Hb_002072_010 Hb_002367_110--Hb_002072_010 Hb_031931_020 Hb_031931_020 Hb_002367_110--Hb_031931_020 Hb_030565_110 Hb_030565_110 Hb_002367_110--Hb_030565_110 Hb_000003_310 Hb_000003_310 Hb_002367_110--Hb_000003_310 Hb_023765_010 Hb_023765_010 Hb_002367_110--Hb_023765_010 Hb_000674_010 Hb_000674_010 Hb_002367_110--Hb_000674_010 Hb_002072_010--Hb_030565_110 Hb_003058_200 Hb_003058_200 Hb_002072_010--Hb_003058_200 Hb_002072_010--Hb_000674_010 Hb_000244_260 Hb_000244_260 Hb_002072_010--Hb_000244_260 Hb_005000_090 Hb_005000_090 Hb_002072_010--Hb_005000_090 Hb_000019_170 Hb_000019_170 Hb_002072_010--Hb_000019_170 Hb_000140_450 Hb_000140_450 Hb_031931_020--Hb_000140_450 Hb_005062_110 Hb_005062_110 Hb_031931_020--Hb_005062_110 Hb_000320_290 Hb_000320_290 Hb_031931_020--Hb_000320_290 Hb_000058_110 Hb_000058_110 Hb_031931_020--Hb_000058_110 Hb_001159_030 Hb_001159_030 Hb_031931_020--Hb_001159_030 Hb_003371_190 Hb_003371_190 Hb_030565_110--Hb_003371_190 Hb_030565_110--Hb_000003_310 Hb_030565_110--Hb_000244_260 Hb_000254_070 Hb_000254_070 Hb_030565_110--Hb_000254_070 Hb_000003_310--Hb_000254_070 Hb_000701_030 Hb_000701_030 Hb_000003_310--Hb_000701_030 Hb_021576_070 Hb_021576_070 Hb_000003_310--Hb_021576_070 Hb_000684_310 Hb_000684_310 Hb_000003_310--Hb_000684_310 Hb_000679_040 Hb_000679_040 Hb_000003_310--Hb_000679_040 Hb_000418_020 Hb_000418_020 Hb_000003_310--Hb_000418_020 Hb_023765_010--Hb_000674_010 Hb_023765_010--Hb_005000_090 Hb_023765_010--Hb_002072_010 Hb_002400_060 Hb_002400_060 Hb_023765_010--Hb_002400_060 Hb_028077_020 Hb_028077_020 Hb_023765_010--Hb_028077_020 Hb_000674_010--Hb_003058_200 Hb_003125_180 Hb_003125_180 Hb_000674_010--Hb_003125_180 Hb_021297_020 Hb_021297_020 Hb_000674_010--Hb_021297_020 Hb_002851_010 Hb_002851_010 Hb_000674_010--Hb_002851_010 Hb_000674_010--Hb_005000_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.5951 96.8631 62.1065 324.186 92.529 75.8089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.7011 16.6553 26.9637 148.515 180.243

CAGE analysis