Hb_023765_010

Information

Type -
Description -
Location Contig23765: 5843-9094
Sequence    

Annotation

kegg
ID rcu:RCOM_1621460
description Nucleotide pyrophosphatase/phosphodiesterase, putative
nr
ID AGL44406.1
description calcineurin-like phosphoesterase [Manihot esculenta]
swissprot
ID Q9LMG7
description Probable inactive purple acid phosphatase 2 OS=Arabidopsis thaliana GN=PAP2 PE=2 SV=1
trembl
ID V9NC56
description Purple acid phosphatase OS=Manihot esculenta GN=PAP2 PE=2 SV=1
Gene Ontology
ID GO:0003993
description probable inactive purple acid phosphatase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24964: 5898-9009 , PASA_asmbl_24965: 6934-7169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023765_010 0.0 - - calcineurin-like phosphoesterase [Manihot esculenta]
2 Hb_000674_010 0.0902954543 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
3 Hb_005000_090 0.0998378117 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
4 Hb_002072_010 0.1115808109 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002400_060 0.1160684908 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
6 Hb_028077_020 0.1160793125 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002367_110 0.1161832624 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
8 Hb_000265_140 0.1179466762 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
9 Hb_000492_080 0.1181623991 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
10 Hb_001103_090 0.1203537604 - - PREDICTED: patellin-3 [Populus euphratica]
11 Hb_021297_020 0.1208326411 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
12 Hb_001437_190 0.1273183881 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000237_050 0.1275910339 - - CP2 [Hevea brasiliensis]
14 Hb_001801_020 0.1291151143 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
15 Hb_001998_220 0.129892593 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
16 Hb_119600_050 0.1300570927 - - sugar transporter, putative [Ricinus communis]
17 Hb_003417_010 0.1306989578 - - PREDICTED: protein TPLATE [Jatropha curcas]
18 Hb_000340_080 0.1309863955 - - PREDICTED: isoamylase 2, chloroplastic [Jatropha curcas]
19 Hb_009252_030 0.1332009203 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
20 Hb_002662_050 0.1341340332 - - cysteine protease CP1 [Manihot esculenta]

Gene co-expression network

sample Hb_023765_010 Hb_023765_010 Hb_000674_010 Hb_000674_010 Hb_023765_010--Hb_000674_010 Hb_005000_090 Hb_005000_090 Hb_023765_010--Hb_005000_090 Hb_002072_010 Hb_002072_010 Hb_023765_010--Hb_002072_010 Hb_002400_060 Hb_002400_060 Hb_023765_010--Hb_002400_060 Hb_028077_020 Hb_028077_020 Hb_023765_010--Hb_028077_020 Hb_002367_110 Hb_002367_110 Hb_023765_010--Hb_002367_110 Hb_003058_200 Hb_003058_200 Hb_000674_010--Hb_003058_200 Hb_003125_180 Hb_003125_180 Hb_000674_010--Hb_003125_180 Hb_000674_010--Hb_002072_010 Hb_021297_020 Hb_021297_020 Hb_000674_010--Hb_021297_020 Hb_002851_010 Hb_002851_010 Hb_000674_010--Hb_002851_010 Hb_000674_010--Hb_005000_090 Hb_102763_010 Hb_102763_010 Hb_005000_090--Hb_102763_010 Hb_001366_270 Hb_001366_270 Hb_005000_090--Hb_001366_270 Hb_009476_120 Hb_009476_120 Hb_005000_090--Hb_009476_120 Hb_001998_220 Hb_001998_220 Hb_005000_090--Hb_001998_220 Hb_000492_080 Hb_000492_080 Hb_005000_090--Hb_000492_080 Hb_030565_110 Hb_030565_110 Hb_002072_010--Hb_030565_110 Hb_002072_010--Hb_003058_200 Hb_000244_260 Hb_000244_260 Hb_002072_010--Hb_000244_260 Hb_002072_010--Hb_005000_090 Hb_000019_170 Hb_000019_170 Hb_002072_010--Hb_000019_170 Hb_001801_020 Hb_001801_020 Hb_002400_060--Hb_001801_020 Hb_002311_130 Hb_002311_130 Hb_002400_060--Hb_002311_130 Hb_001210_040 Hb_001210_040 Hb_002400_060--Hb_001210_040 Hb_009674_050 Hb_009674_050 Hb_002400_060--Hb_009674_050 Hb_033642_060 Hb_033642_060 Hb_002400_060--Hb_033642_060 Hb_000265_140 Hb_000265_140 Hb_002400_060--Hb_000265_140 Hb_001103_090 Hb_001103_090 Hb_028077_020--Hb_001103_090 Hb_001675_320 Hb_001675_320 Hb_028077_020--Hb_001675_320 Hb_000705_180 Hb_000705_180 Hb_028077_020--Hb_000705_180 Hb_001009_150 Hb_001009_150 Hb_028077_020--Hb_001009_150 Hb_001097_040 Hb_001097_040 Hb_028077_020--Hb_001097_040 Hb_005970_010 Hb_005970_010 Hb_028077_020--Hb_005970_010 Hb_002367_110--Hb_002072_010 Hb_031931_020 Hb_031931_020 Hb_002367_110--Hb_031931_020 Hb_002367_110--Hb_030565_110 Hb_000003_310 Hb_000003_310 Hb_002367_110--Hb_000003_310 Hb_002367_110--Hb_000674_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.409 66.096 18.9771 102.417 34.8105 33.0092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6948 8.87099 17.7052 53.2632 70.3621

CAGE analysis