Hb_003058_200

Information

Type -
Description -
Location Contig3058: 185117-192594
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28020g
description POPTRDRAFT_840300; dihydropyrimidinase family protein
nr
ID XP_011024994.1
description PREDICTED: dihydropyrimidinase [Populus euphratica]
swissprot
ID Q9FMP3
description Dihydropyrimidinase OS=Arabidopsis thaliana GN=PYD2 PE=1 SV=1
trembl
ID B9GG62
description Dihydropyrimidinase family protein OS=Populus trichocarpa GN=POPTR_0001s28020g PE=4 SV=2
Gene Ontology
ID GO:0005783
description dihydropyrimidinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32335: 185205-192702 , PASA_asmbl_32336: 186038-186193
cDNA
(Sanger)
(ID:Location)		 016_F13.ab1: 185205-187638 , 020_A06.ab1: 185205-187695 , 038_P22.ab1: 185207-187616 , 047_E07.ab1: 185205-187618

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_200 0.0 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
2 Hb_002072_010 0.0758968731 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000674_010 0.0769360795 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
4 Hb_000019_170 0.0804900678 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
5 Hb_021297_020 0.0859939102 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
6 Hb_002851_010 0.0862550544 - - sugar transporter, putative [Ricinus communis]
7 Hb_003125_180 0.0904973632 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
8 Hb_020805_180 0.0935488932 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
9 Hb_135959_010 0.0940292267 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
10 Hb_011032_010 0.0946324144 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
11 Hb_000649_060 0.0987766984 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
12 Hb_069619_010 0.1021798293 - - Aspartic proteinase precursor, putative [Ricinus communis]
13 Hb_000723_010 0.1042720909 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_002027_190 0.1061089154 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
15 Hb_000157_070 0.1080393259 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
16 Hb_000244_260 0.1123743224 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
17 Hb_080147_050 0.1126386392 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
18 Hb_000321_090 0.1126645106 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
19 Hb_169051_010 0.1177888157 - - JHL06B08.1 [Jatropha curcas]
20 Hb_005000_090 0.1184112482 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003058_200 Hb_003058_200 Hb_002072_010 Hb_002072_010 Hb_003058_200--Hb_002072_010 Hb_000674_010 Hb_000674_010 Hb_003058_200--Hb_000674_010 Hb_000019_170 Hb_000019_170 Hb_003058_200--Hb_000019_170 Hb_021297_020 Hb_021297_020 Hb_003058_200--Hb_021297_020 Hb_002851_010 Hb_002851_010 Hb_003058_200--Hb_002851_010 Hb_003125_180 Hb_003125_180 Hb_003058_200--Hb_003125_180 Hb_030565_110 Hb_030565_110 Hb_002072_010--Hb_030565_110 Hb_002072_010--Hb_000674_010 Hb_000244_260 Hb_000244_260 Hb_002072_010--Hb_000244_260 Hb_005000_090 Hb_005000_090 Hb_002072_010--Hb_005000_090 Hb_002072_010--Hb_000019_170 Hb_000674_010--Hb_003125_180 Hb_000674_010--Hb_021297_020 Hb_000674_010--Hb_002851_010 Hb_000674_010--Hb_005000_090 Hb_000019_170--Hb_003125_180 Hb_102763_010 Hb_102763_010 Hb_000019_170--Hb_102763_010 Hb_000823_010 Hb_000823_010 Hb_000019_170--Hb_000823_010 Hb_000157_070 Hb_000157_070 Hb_000019_170--Hb_000157_070 Hb_000649_060 Hb_000649_060 Hb_021297_020--Hb_000649_060 Hb_027445_020 Hb_027445_020 Hb_021297_020--Hb_027445_020 Hb_000701_030 Hb_000701_030 Hb_021297_020--Hb_000701_030 Hb_001226_130 Hb_001226_130 Hb_021297_020--Hb_001226_130 Hb_135959_010 Hb_135959_010 Hb_002851_010--Hb_135959_010 Hb_002027_190 Hb_002027_190 Hb_002851_010--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_002851_010--Hb_020805_180 Hb_002851_010--Hb_000157_070 Hb_002851_010--Hb_000649_060 Hb_011032_010 Hb_011032_010 Hb_003125_180--Hb_011032_010 Hb_169051_010 Hb_169051_010 Hb_003125_180--Hb_169051_010 Hb_029879_120 Hb_029879_120 Hb_003125_180--Hb_029879_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5838 26.8949 17.6263 44.4573 19.8066 19.2666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.8439 4.59805 8.56217 55.1964 39.6401

CAGE analysis