Hb_000823_010

Information

Type -
Description -
Location Contig823: 10851-15681
Sequence    

Annotation

kegg
ID csv:101229371
description splicing factor U2af large subunit B-like
nr
ID XP_012079058.1
description PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
swissprot
ID Q9ZR40
description Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1
trembl
ID A0A067K6F1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12252 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor u2af large subunit b-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59660: 10799-15635 , PASA_asmbl_59661: 10799-12556 , PASA_asmbl_59662: 12602-15635 , PASA_asmbl_59663: 13244-13577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000823_010 0.0 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
2 Hb_000019_170 0.1006829163 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
3 Hb_153257_010 0.1215989038 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
4 Hb_000157_070 0.1217202699 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
5 Hb_001322_180 0.1233087637 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
6 Hb_003058_200 0.1265113735 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
7 Hb_000834_230 0.1282096849 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
8 Hb_003125_180 0.1287760768 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
9 Hb_080147_050 0.1293329554 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
10 Hb_000321_090 0.1294614187 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
11 Hb_000702_060 0.13209879 - - conserved hypothetical protein [Ricinus communis]
12 Hb_135959_010 0.1333125323 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
13 Hb_098315_090 0.1336586079 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
14 Hb_053575_020 0.1339450336 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
15 Hb_020805_180 0.1354440228 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
16 Hb_169051_010 0.1354452414 - - JHL06B08.1 [Jatropha curcas]
17 Hb_003626_040 0.1355436536 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
18 Hb_002025_270 0.1371900939 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
19 Hb_005217_040 0.1402417737 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
20 Hb_000243_400 0.1408336604 - - PREDICTED: nucleolin-like [Jatropha curcas]

Gene co-expression network

sample Hb_000823_010 Hb_000823_010 Hb_000019_170 Hb_000019_170 Hb_000823_010--Hb_000019_170 Hb_153257_010 Hb_153257_010 Hb_000823_010--Hb_153257_010 Hb_000157_070 Hb_000157_070 Hb_000823_010--Hb_000157_070 Hb_001322_180 Hb_001322_180 Hb_000823_010--Hb_001322_180 Hb_003058_200 Hb_003058_200 Hb_000823_010--Hb_003058_200 Hb_000834_230 Hb_000834_230 Hb_000823_010--Hb_000834_230 Hb_003125_180 Hb_003125_180 Hb_000019_170--Hb_003125_180 Hb_000019_170--Hb_003058_200 Hb_002072_010 Hb_002072_010 Hb_000019_170--Hb_002072_010 Hb_102763_010 Hb_102763_010 Hb_000019_170--Hb_102763_010 Hb_000019_170--Hb_000157_070 Hb_000139_510 Hb_000139_510 Hb_153257_010--Hb_000139_510 Hb_002093_050 Hb_002093_050 Hb_153257_010--Hb_002093_050 Hb_005485_070 Hb_005485_070 Hb_153257_010--Hb_005485_070 Hb_004096_220 Hb_004096_220 Hb_153257_010--Hb_004096_220 Hb_000261_310 Hb_000261_310 Hb_153257_010--Hb_000261_310 Hb_135959_010 Hb_135959_010 Hb_000157_070--Hb_135959_010 Hb_020805_180 Hb_020805_180 Hb_000157_070--Hb_020805_180 Hb_002851_010 Hb_002851_010 Hb_000157_070--Hb_002851_010 Hb_080147_050 Hb_080147_050 Hb_000157_070--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000157_070--Hb_000342_050 Hb_003626_050 Hb_003626_050 Hb_000157_070--Hb_003626_050 Hb_000321_090 Hb_000321_090 Hb_001322_180--Hb_000321_090 Hb_000049_250 Hb_000049_250 Hb_001322_180--Hb_000049_250 Hb_006829_100 Hb_006829_100 Hb_001322_180--Hb_006829_100 Hb_001322_180--Hb_000834_230 Hb_000035_010 Hb_000035_010 Hb_001322_180--Hb_000035_010 Hb_002027_190 Hb_002027_190 Hb_001322_180--Hb_002027_190 Hb_003058_200--Hb_002072_010 Hb_000674_010 Hb_000674_010 Hb_003058_200--Hb_000674_010 Hb_021297_020 Hb_021297_020 Hb_003058_200--Hb_021297_020 Hb_003058_200--Hb_002851_010 Hb_003058_200--Hb_003125_180 Hb_000787_200 Hb_000787_200 Hb_000834_230--Hb_000787_200 Hb_000834_230--Hb_080147_050 Hb_000834_230--Hb_000321_090 Hb_000834_230--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000834_230--Hb_000220_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.89917 20.2882 17.0383 18.8314 10.351 8.35861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24412 3.01515 2.59423 41.3728 22.0746

CAGE analysis