Hb_003626_050

Information

Type -
Description -
Location Contig3626: 28238-33400
Sequence    

Annotation

kegg
ID rcu:RCOM_1049930
description malic enzyme, putative (EC:1.1.1.40)
nr
ID XP_002514230.1
description malic enzyme, putative [Ricinus communis]
swissprot
ID P51615
description NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1
trembl
ID B9RKI6
description Malic enzyme OS=Ricinus communis GN=RCOM_1049930 PE=3 SV=1
Gene Ontology
ID GO:0005829
description nadp-dependent malic enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37243: 28239-33034
cDNA
(Sanger)
(ID:Location)		 016_P17.ab1: 31536-33023 , 039_P11.ab1: 31556-33023 , 053_K21.ab1: 31538-33023

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003626_050 0.0 - - malic enzyme, putative [Ricinus communis]
2 Hb_002213_090 0.0848769845 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
3 Hb_000157_070 0.0896343539 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
4 Hb_107298_010 0.0985647659 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
5 Hb_000505_100 0.1047590698 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100250663 [Vitis vinifera]
6 Hb_001500_070 0.1080236487 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006829_100 0.1137098199 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001322_180 0.1138293921 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
9 Hb_009732_020 0.1169447789 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
10 Hb_004837_280 0.1169746182 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
11 Hb_000271_120 0.1215973471 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
12 Hb_132101_010 0.122586891 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
13 Hb_000049_250 0.122591839 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
14 Hb_135959_010 0.1229959759 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
15 Hb_001497_060 0.1241895282 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
16 Hb_020805_180 0.1249386882 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
17 Hb_000334_260 0.1266923989 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
18 Hb_000395_220 0.1287601189 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
19 Hb_000122_080 0.1294301424 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
20 Hb_001780_150 0.1299671231 - - ceramidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003626_050 Hb_003626_050 Hb_002213_090 Hb_002213_090 Hb_003626_050--Hb_002213_090 Hb_000157_070 Hb_000157_070 Hb_003626_050--Hb_000157_070 Hb_107298_010 Hb_107298_010 Hb_003626_050--Hb_107298_010 Hb_000505_100 Hb_000505_100 Hb_003626_050--Hb_000505_100 Hb_001500_070 Hb_001500_070 Hb_003626_050--Hb_001500_070 Hb_006829_100 Hb_006829_100 Hb_003626_050--Hb_006829_100 Hb_002213_090--Hb_000157_070 Hb_001780_150 Hb_001780_150 Hb_002213_090--Hb_001780_150 Hb_002477_040 Hb_002477_040 Hb_002213_090--Hb_002477_040 Hb_135959_010 Hb_135959_010 Hb_002213_090--Hb_135959_010 Hb_002213_090--Hb_107298_010 Hb_000157_070--Hb_135959_010 Hb_020805_180 Hb_020805_180 Hb_000157_070--Hb_020805_180 Hb_002851_010 Hb_002851_010 Hb_000157_070--Hb_002851_010 Hb_080147_050 Hb_080147_050 Hb_000157_070--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000157_070--Hb_000342_050 Hb_004837_280 Hb_004837_280 Hb_107298_010--Hb_004837_280 Hb_005489_140 Hb_005489_140 Hb_107298_010--Hb_005489_140 Hb_001900_100 Hb_001900_100 Hb_107298_010--Hb_001900_100 Hb_000159_120 Hb_000159_120 Hb_107298_010--Hb_000159_120 Hb_001019_050 Hb_001019_050 Hb_107298_010--Hb_001019_050 Hb_003777_290 Hb_003777_290 Hb_107298_010--Hb_003777_290 Hb_000505_100--Hb_006829_100 Hb_000122_080 Hb_000122_080 Hb_000505_100--Hb_000122_080 Hb_000041_060 Hb_000041_060 Hb_000505_100--Hb_000041_060 Hb_000035_010 Hb_000035_010 Hb_000505_100--Hb_000035_010 Hb_000049_250 Hb_000049_250 Hb_000505_100--Hb_000049_250 Hb_004041_100 Hb_004041_100 Hb_001500_070--Hb_004041_100 Hb_001500_070--Hb_002213_090 Hb_000625_030 Hb_000625_030 Hb_001500_070--Hb_000625_030 Hb_000347_110 Hb_000347_110 Hb_001500_070--Hb_000347_110 Hb_012325_010 Hb_012325_010 Hb_001500_070--Hb_012325_010 Hb_007747_170 Hb_007747_170 Hb_006829_100--Hb_007747_170 Hb_001322_180 Hb_001322_180 Hb_006829_100--Hb_001322_180 Hb_007426_140 Hb_007426_140 Hb_006829_100--Hb_007426_140 Hb_019840_030 Hb_019840_030 Hb_006829_100--Hb_019840_030 Hb_000009_120 Hb_000009_120 Hb_006829_100--Hb_000009_120 Hb_000834_230 Hb_000834_230 Hb_006829_100--Hb_000834_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.648 45.8314 48.7737 48.2736 14.9351 37.547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9711 12.6658 10.7932 113.281 41.5856

CAGE analysis