Hb_000122_080

Information

Type -
Description -
Location Contig122: 71833-74176
Sequence    

Annotation

kegg
ID rcu:RCOM_0688330
description hypothetical protein
nr
ID XP_012091210.1
description PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
swissprot
ID F4IH31
description Staphylococcal-like nuclease CAN2 OS=Arabidopsis thaliana GN=CAN2 PE=1 SV=1
trembl
ID A0A067JQC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03370 PE=4 SV=1
Gene Ontology
ID GO:0003676
description staphylococcal-like nuclease can2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06658: 71883-74168 , PASA_asmbl_06659: 71883-73897
cDNA
(Sanger)
(ID:Location)		 048_B07.ab1: 72889-74168

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_080 0.0 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
2 Hb_002596_060 0.0802885628 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001733_030 0.0905192196 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
4 Hb_006501_010 0.0906364231 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
5 Hb_006829_100 0.0943364813 - - conserved hypothetical protein [Ricinus communis]
6 Hb_019840_030 0.100316349 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
7 Hb_002259_080 0.1093298476 - - protein transport protein sec23, putative [Ricinus communis]
8 Hb_002687_060 0.1109349128 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
9 Hb_000849_080 0.1129981131 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
10 Hb_005298_020 0.1140051965 - - PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]
11 Hb_016734_020 0.116974856 - - sugar transporter, putative [Ricinus communis]
12 Hb_001307_240 0.1172962407 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
13 Hb_000106_020 0.1178053742 - - PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
14 Hb_004837_280 0.1212612592 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
15 Hb_000834_230 0.1212687121 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
16 Hb_000297_030 0.1226278271 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
17 Hb_080147_050 0.1241004291 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
18 Hb_001085_290 0.1245909717 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
19 Hb_002007_260 0.1254003307 - - beta-mannosidase, putative [Ricinus communis]
20 Hb_007747_170 0.1258336765 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]

Gene co-expression network

sample Hb_000122_080 Hb_000122_080 Hb_002596_060 Hb_002596_060 Hb_000122_080--Hb_002596_060 Hb_001733_030 Hb_001733_030 Hb_000122_080--Hb_001733_030 Hb_006501_010 Hb_006501_010 Hb_000122_080--Hb_006501_010 Hb_006829_100 Hb_006829_100 Hb_000122_080--Hb_006829_100 Hb_019840_030 Hb_019840_030 Hb_000122_080--Hb_019840_030 Hb_002259_080 Hb_002259_080 Hb_000122_080--Hb_002259_080 Hb_002596_060--Hb_019840_030 Hb_004837_280 Hb_004837_280 Hb_002596_060--Hb_004837_280 Hb_060980_010 Hb_060980_010 Hb_002596_060--Hb_060980_010 Hb_002596_060--Hb_002259_080 Hb_000161_210 Hb_000161_210 Hb_002596_060--Hb_000161_210 Hb_133702_030 Hb_133702_030 Hb_001733_030--Hb_133702_030 Hb_000365_030 Hb_000365_030 Hb_001733_030--Hb_000365_030 Hb_004109_370 Hb_004109_370 Hb_001733_030--Hb_004109_370 Hb_004096_190 Hb_004096_190 Hb_001733_030--Hb_004096_190 Hb_001454_370 Hb_001454_370 Hb_001733_030--Hb_001454_370 Hb_001733_030--Hb_006501_010 Hb_000994_020 Hb_000994_020 Hb_006501_010--Hb_000994_020 Hb_000082_010 Hb_000082_010 Hb_006501_010--Hb_000082_010 Hb_005723_020 Hb_005723_020 Hb_006501_010--Hb_005723_020 Hb_015026_100 Hb_015026_100 Hb_006501_010--Hb_015026_100 Hb_007413_040 Hb_007413_040 Hb_006501_010--Hb_007413_040 Hb_002686_040 Hb_002686_040 Hb_006501_010--Hb_002686_040 Hb_007747_170 Hb_007747_170 Hb_006829_100--Hb_007747_170 Hb_001322_180 Hb_001322_180 Hb_006829_100--Hb_001322_180 Hb_007426_140 Hb_007426_140 Hb_006829_100--Hb_007426_140 Hb_006829_100--Hb_019840_030 Hb_000009_120 Hb_000009_120 Hb_006829_100--Hb_000009_120 Hb_000834_230 Hb_000834_230 Hb_006829_100--Hb_000834_230 Hb_019840_030--Hb_060980_010 Hb_019840_030--Hb_007747_170 Hb_001221_180 Hb_001221_180 Hb_019840_030--Hb_001221_180 Hb_001085_290 Hb_001085_290 Hb_019840_030--Hb_001085_290 Hb_027506_010 Hb_027506_010 Hb_019840_030--Hb_027506_010 Hb_000635_030 Hb_000635_030 Hb_002259_080--Hb_000635_030 Hb_141069_010 Hb_141069_010 Hb_002259_080--Hb_141069_010 Hb_000130_020 Hb_000130_020 Hb_002259_080--Hb_000130_020 Hb_000243_300 Hb_000243_300 Hb_002259_080--Hb_000243_300 Hb_002391_360 Hb_002391_360 Hb_002259_080--Hb_002391_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4729 29.1522 46.7001 36.8698 29.8381 28.3077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1948 8.07778 11.6697 71.2924 27.1312

CAGE analysis