Hb_007426_140

Information

Type -
Description -
Location Contig7426: 146109-153758
Sequence    

Annotation

kegg
ID rcu:RCOM_0631280
description ornithine aminotransferase, putative (EC:2.6.1.13)
nr
ID XP_002519647.1
description ornithine aminotransferase, putative [Ricinus communis]
swissprot
ID Q9FNK4
description Ornithine aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=DELTA-OAT PE=1 SV=1
trembl
ID B9S0X8
description Ornithine aminotransferase, putative OS=Ricinus communis GN=RCOM_0631280 PE=3 SV=1
Gene Ontology
ID GO:0008483
description ornithine mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_140 0.0 - - ornithine aminotransferase, putative [Ricinus communis]
2 Hb_000395_220 0.0648711933 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
3 Hb_083799_010 0.0840751781 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_002836_100 0.0849490639 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
5 Hb_006829_100 0.0863955709 - - conserved hypothetical protein [Ricinus communis]
6 Hb_075315_010 0.1043856171 - - ornithine aminotransferase [Camellia sinensis]
7 Hb_003849_240 0.1056829501 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_005081_020 0.1062972511 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
9 Hb_002272_170 0.1068812207 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
10 Hb_007765_030 0.1072647932 - - PREDICTED: neutral ceramidase [Jatropha curcas]
11 Hb_002217_220 0.1079670519 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
12 Hb_001780_150 0.1115719919 - - ceramidase, putative [Ricinus communis]
13 Hb_000692_160 0.1137284996 - - Transportin 1 isoform 1 [Theobroma cacao]
14 Hb_000260_660 0.1147249173 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001105_160 0.1165420187 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
16 Hb_001322_180 0.1170362642 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
17 Hb_001269_140 0.1175101809 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
18 Hb_011287_010 0.1194459367 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000251_040 0.1213058682 - - PREDICTED: DNA polymerase alpha catalytic subunit isoform X1 [Jatropha curcas]
20 Hb_000237_190 0.1213125177 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007426_140 Hb_007426_140 Hb_000395_220 Hb_000395_220 Hb_007426_140--Hb_000395_220 Hb_083799_010 Hb_083799_010 Hb_007426_140--Hb_083799_010 Hb_002836_100 Hb_002836_100 Hb_007426_140--Hb_002836_100 Hb_006829_100 Hb_006829_100 Hb_007426_140--Hb_006829_100 Hb_075315_010 Hb_075315_010 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240 Hb_000395_220--Hb_083799_010 Hb_009732_020 Hb_009732_020 Hb_000395_220--Hb_009732_020 Hb_001780_150 Hb_001780_150 Hb_000395_220--Hb_001780_150 Hb_002272_170 Hb_002272_170 Hb_000395_220--Hb_002272_170 Hb_011287_010 Hb_011287_010 Hb_000395_220--Hb_011287_010 Hb_083799_010--Hb_002272_170 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_002836_100--Hb_083799_010 Hb_001160_070 Hb_001160_070 Hb_002836_100--Hb_001160_070 Hb_002836_100--Hb_000395_220 Hb_002836_100--Hb_075315_010 Hb_033772_070 Hb_033772_070 Hb_002836_100--Hb_033772_070 Hb_007747_170 Hb_007747_170 Hb_006829_100--Hb_007747_170 Hb_001322_180 Hb_001322_180 Hb_006829_100--Hb_001322_180 Hb_019840_030 Hb_019840_030 Hb_006829_100--Hb_019840_030 Hb_000009_120 Hb_000009_120 Hb_006829_100--Hb_000009_120 Hb_000834_230 Hb_000834_230 Hb_006829_100--Hb_000834_230 Hb_075315_010--Hb_005081_020 Hb_039946_050 Hb_039946_050 Hb_075315_010--Hb_039946_050 Hb_004450_070 Hb_004450_070 Hb_075315_010--Hb_004450_070 Hb_075315_010--Hb_007747_170 Hb_001105_160 Hb_001105_160 Hb_075315_010--Hb_001105_160 Hb_003849_240--Hb_000009_120 Hb_002005_090 Hb_002005_090 Hb_003849_240--Hb_002005_090 Hb_001031_090 Hb_001031_090 Hb_003849_240--Hb_001031_090 Hb_007765_030 Hb_007765_030 Hb_003849_240--Hb_007765_030 Hb_003849_240--Hb_000395_220 Hb_005333_050 Hb_005333_050 Hb_003849_240--Hb_005333_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.24392 15.5706 7.15824 11.7753 6.9785 9.96795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.96673 3.50574 4.28618 23.3201 4.76656

CAGE analysis