Hb_002005_090

Information

Type -
Description -
Location Contig2005: 93628-96749
Sequence    

Annotation

kegg
ID rcu:RCOM_2013510
description hypothetical protein
nr
ID XP_002535134.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TA65
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_2013510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20310: 77048-93978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002005_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005048_100 0.0670423583 - - secretory carrier membrane protein, putative [Ricinus communis]
3 Hb_003849_240 0.0823304809 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
4 Hb_000823_030 0.086796241 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
5 Hb_000069_410 0.0900851447 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
6 Hb_003058_060 0.0913291491 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
7 Hb_001575_010 0.0959351145 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_023226_080 0.0962146709 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
9 Hb_001301_170 0.0975209741 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
10 Hb_000862_040 0.0979852551 - - ara4-interacting protein, putative [Ricinus communis]
11 Hb_001821_090 0.1001838187 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
12 Hb_000307_210 0.1029503916 - - Transportin 1 isoform 1 [Theobroma cacao]
13 Hb_011512_090 0.1032614874 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
14 Hb_003177_060 0.103338808 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
15 Hb_001123_050 0.1033849582 - - conserved hypothetical protein [Ricinus communis]
16 Hb_028487_010 0.103486274 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
17 Hb_002477_090 0.1040126997 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
18 Hb_000012_260 0.1042095875 - - Far upstream element-binding 2 [Gossypium arboreum]
19 Hb_000640_130 0.1047559592 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
20 Hb_002110_030 0.1048861787 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_002005_090 Hb_002005_090 Hb_005048_100 Hb_005048_100 Hb_002005_090--Hb_005048_100 Hb_003849_240 Hb_003849_240 Hb_002005_090--Hb_003849_240 Hb_000823_030 Hb_000823_030 Hb_002005_090--Hb_000823_030 Hb_000069_410 Hb_000069_410 Hb_002005_090--Hb_000069_410 Hb_003058_060 Hb_003058_060 Hb_002005_090--Hb_003058_060 Hb_001575_010 Hb_001575_010 Hb_002005_090--Hb_001575_010 Hb_002217_430 Hb_002217_430 Hb_005048_100--Hb_002217_430 Hb_025194_020 Hb_025194_020 Hb_005048_100--Hb_025194_020 Hb_001301_170 Hb_001301_170 Hb_005048_100--Hb_001301_170 Hb_002477_090 Hb_002477_090 Hb_005048_100--Hb_002477_090 Hb_002217_030 Hb_002217_030 Hb_005048_100--Hb_002217_030 Hb_000009_120 Hb_000009_120 Hb_003849_240--Hb_000009_120 Hb_001031_090 Hb_001031_090 Hb_003849_240--Hb_001031_090 Hb_007765_030 Hb_007765_030 Hb_003849_240--Hb_007765_030 Hb_000395_220 Hb_000395_220 Hb_003849_240--Hb_000395_220 Hb_005333_050 Hb_005333_050 Hb_003849_240--Hb_005333_050 Hb_001047_200 Hb_001047_200 Hb_000823_030--Hb_001047_200 Hb_003142_040 Hb_003142_040 Hb_000823_030--Hb_003142_040 Hb_088144_020 Hb_088144_020 Hb_000823_030--Hb_088144_020 Hb_007426_060 Hb_007426_060 Hb_000823_030--Hb_007426_060 Hb_000184_150 Hb_000184_150 Hb_000823_030--Hb_000184_150 Hb_001171_030 Hb_001171_030 Hb_000823_030--Hb_001171_030 Hb_001821_090 Hb_001821_090 Hb_000069_410--Hb_001821_090 Hb_000069_410--Hb_001575_010 Hb_003581_170 Hb_003581_170 Hb_000069_410--Hb_003581_170 Hb_023226_080 Hb_023226_080 Hb_000069_410--Hb_023226_080 Hb_001699_280 Hb_001699_280 Hb_000069_410--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_000069_410--Hb_000105_040 Hb_000369_130 Hb_000369_130 Hb_003058_060--Hb_000369_130 Hb_003058_060--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_003058_060--Hb_002107_070 Hb_002170_050 Hb_002170_050 Hb_003058_060--Hb_002170_050 Hb_000579_230 Hb_000579_230 Hb_003058_060--Hb_000579_230 Hb_104061_020 Hb_104061_020 Hb_003058_060--Hb_104061_020 Hb_005143_030 Hb_005143_030 Hb_001575_010--Hb_005143_030 Hb_001575_010--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_001575_010--Hb_028487_010 Hb_001575_010--Hb_002170_050 Hb_011173_030 Hb_011173_030 Hb_001575_010--Hb_011173_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.1657 4.87099 2.00535 1.70257 3.08344 2.83658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73873 1.41817 1.58427 5.56619 1.58925

CAGE analysis