Hb_005048_100

Information

Type -
Description -
Location Contig5048: 85660-111817
Sequence    

Annotation

kegg
ID rcu:RCOM_1062750
description secretory carrier membrane protein, putative
nr
ID XP_002521417.1
description secretory carrier membrane protein, putative [Ricinus communis]
swissprot
ID Q9M5P2
description Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1
trembl
ID B9S5Z8
description Secretory carrier membrane protein, putative OS=Ricinus communis GN=RCOM_1062750 PE=4 SV=1
Gene Ontology
ID GO:0016021
description secretory carrier-associated membrane protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45978: 85665-93780
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005048_100 0.0 - - secretory carrier membrane protein, putative [Ricinus communis]
2 Hb_002005_090 0.0670423583 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002217_430 0.0858483438 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
4 Hb_025194_020 0.0902550795 - - PREDICTED: uncharacterized protein C1F8.04c-like isoform X1 [Jatropha curcas]
5 Hb_001301_170 0.090821146 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
6 Hb_002477_090 0.0916803502 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
7 Hb_002217_030 0.0977687721 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
8 Hb_001232_010 0.0985499839 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
9 Hb_000823_030 0.0989337131 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
10 Hb_004787_080 0.0990346354 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
11 Hb_015026_110 0.0992041809 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
12 Hb_003058_060 0.1012852425 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
13 Hb_001235_140 0.1014026046 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
14 Hb_000012_260 0.1028297069 - - Far upstream element-binding 2 [Gossypium arboreum]
15 Hb_104061_020 0.1043715396 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
16 Hb_001123_050 0.1046841228 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000182_040 0.1048300945 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
18 Hb_011512_090 0.106706127 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
19 Hb_003849_240 0.106751753 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_004267_040 0.1077079158 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]

Gene co-expression network

sample Hb_005048_100 Hb_005048_100 Hb_002005_090 Hb_002005_090 Hb_005048_100--Hb_002005_090 Hb_002217_430 Hb_002217_430 Hb_005048_100--Hb_002217_430 Hb_025194_020 Hb_025194_020 Hb_005048_100--Hb_025194_020 Hb_001301_170 Hb_001301_170 Hb_005048_100--Hb_001301_170 Hb_002477_090 Hb_002477_090 Hb_005048_100--Hb_002477_090 Hb_002217_030 Hb_002217_030 Hb_005048_100--Hb_002217_030 Hb_003849_240 Hb_003849_240 Hb_002005_090--Hb_003849_240 Hb_000823_030 Hb_000823_030 Hb_002005_090--Hb_000823_030 Hb_000069_410 Hb_000069_410 Hb_002005_090--Hb_000069_410 Hb_003058_060 Hb_003058_060 Hb_002005_090--Hb_003058_060 Hb_001575_010 Hb_001575_010 Hb_002005_090--Hb_001575_010 Hb_027472_220 Hb_027472_220 Hb_002217_430--Hb_027472_220 Hb_005542_140 Hb_005542_140 Hb_002217_430--Hb_005542_140 Hb_001668_010 Hb_001668_010 Hb_002217_430--Hb_001668_010 Hb_016734_060 Hb_016734_060 Hb_002217_430--Hb_016734_060 Hb_000398_080 Hb_000398_080 Hb_002217_430--Hb_000398_080 Hb_002350_010 Hb_002350_010 Hb_002217_430--Hb_002350_010 Hb_000365_030 Hb_000365_030 Hb_025194_020--Hb_000365_030 Hb_000237_190 Hb_000237_190 Hb_025194_020--Hb_000237_190 Hb_025194_020--Hb_001301_170 Hb_004787_080 Hb_004787_080 Hb_025194_020--Hb_004787_080 Hb_002259_080 Hb_002259_080 Hb_025194_020--Hb_002259_080 Hb_010053_030 Hb_010053_030 Hb_001301_170--Hb_010053_030 Hb_000664_070 Hb_000664_070 Hb_001301_170--Hb_000664_070 Hb_104061_020 Hb_104061_020 Hb_001301_170--Hb_104061_020 Hb_001301_170--Hb_000823_030 Hb_008147_040 Hb_008147_040 Hb_001301_170--Hb_008147_040 Hb_001318_020 Hb_001318_020 Hb_001301_170--Hb_001318_020 Hb_003913_070 Hb_003913_070 Hb_002477_090--Hb_003913_070 Hb_004934_050 Hb_004934_050 Hb_002477_090--Hb_004934_050 Hb_001761_130 Hb_001761_130 Hb_002477_090--Hb_001761_130 Hb_001123_050 Hb_001123_050 Hb_002477_090--Hb_001123_050 Hb_000106_120 Hb_000106_120 Hb_002477_090--Hb_000106_120 Hb_002477_090--Hb_003058_060 Hb_003464_080 Hb_003464_080 Hb_002217_030--Hb_003464_080 Hb_000200_120 Hb_000200_120 Hb_002217_030--Hb_000200_120 Hb_000182_040 Hb_000182_040 Hb_002217_030--Hb_000182_040 Hb_001232_010 Hb_001232_010 Hb_002217_030--Hb_001232_010 Hb_001860_030 Hb_001860_030 Hb_002217_030--Hb_001860_030 Hb_001235_140 Hb_001235_140 Hb_002217_030--Hb_001235_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9721 20.156 13.0954 8.95764 20.6537 13.862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8712 9.27289 9.18105 31.2724 10.1869

CAGE analysis