Hb_004787_080

Information

Type -
Description -
Location Contig4787: 76271-80162
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa009753mg
description hypothetical protein
nr
ID XP_012080242.1
description PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
swissprot
ID Q9FJJ5
description Microtubule-associated protein RP/EB family member 1B OS=Arabidopsis thaliana GN=EB1B PE=1 SV=1
trembl
ID A0A067KHF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11610 PE=4 SV=1
Gene Ontology
ID GO:0008017
description microtubule-associated protein rp eb family member 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44589: 76329-80263 , PASA_asmbl_44590: 79297-79469 , PASA_asmbl_44591: 76329-80263
cDNA
(Sanger)
(ID:Location)		 023_L11.ab1: 76329-78865

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004787_080 0.0 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
2 Hb_002046_010 0.0794641419 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001009_280 0.0807387579 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
4 Hb_000120_280 0.0837751086 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
5 Hb_004267_040 0.0840792751 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
6 Hb_000565_040 0.0852391465 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
7 Hb_183510_020 0.0864242314 - - coated vesicle membrane protein, putative [Ricinus communis]
8 Hb_000011_100 0.0868083409 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
9 Hb_001430_080 0.0884064127 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
10 Hb_000025_690 0.0925701027 - - spliceosome associated protein, putative [Ricinus communis]
11 Hb_002217_430 0.0931657265 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
12 Hb_128548_010 0.0945803372 - - conserved hypothetical protein [Ricinus communis]
13 Hb_088144_020 0.0953365854 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
14 Hb_006569_030 0.0961363916 - - PREDICTED: uncharacterized protein LOC105650907 isoform X1 [Jatropha curcas]
15 Hb_000635_030 0.0970132034 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
16 Hb_003943_020 0.097038046 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
17 Hb_000922_360 0.0975845094 - - -
18 Hb_000398_080 0.097963571 - - tip120, putative [Ricinus communis]
19 Hb_001277_020 0.0980098949 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
20 Hb_000823_030 0.09892839 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]

Gene co-expression network

sample Hb_004787_080 Hb_004787_080 Hb_002046_010 Hb_002046_010 Hb_004787_080--Hb_002046_010 Hb_001009_280 Hb_001009_280 Hb_004787_080--Hb_001009_280 Hb_000120_280 Hb_000120_280 Hb_004787_080--Hb_000120_280 Hb_004267_040 Hb_004267_040 Hb_004787_080--Hb_004267_040 Hb_000565_040 Hb_000565_040 Hb_004787_080--Hb_000565_040 Hb_183510_020 Hb_183510_020 Hb_004787_080--Hb_183510_020 Hb_000742_170 Hb_000742_170 Hb_002046_010--Hb_000742_170 Hb_002046_010--Hb_001009_280 Hb_000979_220 Hb_000979_220 Hb_002046_010--Hb_000979_220 Hb_002046_010--Hb_183510_020 Hb_016734_060 Hb_016734_060 Hb_002046_010--Hb_016734_060 Hb_005333_050 Hb_005333_050 Hb_002046_010--Hb_005333_050 Hb_000321_140 Hb_000321_140 Hb_001009_280--Hb_000321_140 Hb_001009_280--Hb_183510_020 Hb_002055_020 Hb_002055_020 Hb_001009_280--Hb_002055_020 Hb_000617_230 Hb_000617_230 Hb_001009_280--Hb_000617_230 Hb_027506_010 Hb_027506_010 Hb_001009_280--Hb_027506_010 Hb_000120_280--Hb_004267_040 Hb_000011_100 Hb_000011_100 Hb_000120_280--Hb_000011_100 Hb_000477_050 Hb_000477_050 Hb_000120_280--Hb_000477_050 Hb_000120_280--Hb_183510_020 Hb_001009_320 Hb_001009_320 Hb_000120_280--Hb_001009_320 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090 Hb_004267_040--Hb_000011_100 Hb_000563_130 Hb_000563_130 Hb_004267_040--Hb_000563_130 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_004267_040--Hb_000398_080 Hb_000603_030 Hb_000603_030 Hb_004267_040--Hb_000603_030 Hb_003544_060 Hb_003544_060 Hb_000565_040--Hb_003544_060 Hb_001878_050 Hb_001878_050 Hb_000565_040--Hb_001878_050 Hb_011671_270 Hb_011671_270 Hb_000565_040--Hb_011671_270 Hb_000565_040--Hb_000617_230 Hb_000922_360 Hb_000922_360 Hb_000565_040--Hb_000922_360 Hb_002889_020 Hb_002889_020 Hb_000565_040--Hb_002889_020 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_005867_070 Hb_005867_070 Hb_183510_020--Hb_005867_070 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_000710_040 Hb_000710_040 Hb_183510_020--Hb_000710_040 Hb_001301_150 Hb_001301_150 Hb_183510_020--Hb_001301_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7067 27.4682 30.3588 19.0616 27.9263 14.5739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1392 13.6138 13.5085 40.734 19.821

CAGE analysis