Hb_000565_040

Information

Type -
Description -
Location Contig565: 42123-46082
Sequence    

Annotation

kegg
ID rcu:RCOM_0689650
description superoxide dismutase [mn], putative (EC:1.15.1.1)
nr
ID P35017.1
description RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
swissprot
ID P35017
description Superoxide dismutase [Mn], mitochondrial OS=Hevea brasiliensis GN=SODA PE=2 SV=1
trembl
ID B9S4D7
description Superoxide dismutase OS=Ricinus communis GN=RCOM_0689650 PE=3 SV=1
Gene Ontology
ID GO:0005759
description superoxide dismutase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48987: 42176-46005 , PASA_asmbl_48988: 43846-45864
cDNA
(Sanger)
(ID:Location)		 001_J07.ab1: 42370-45950 , 009_L23.ab1: 42435-45954 , 012_A09.ab1: 42399-45954

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000565_040 0.0 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
2 Hb_003544_060 0.0755596616 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
3 Hb_001878_050 0.0762204489 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
4 Hb_011671_270 0.0772065898 - - phosphofructokinase [Hevea brasiliensis]
5 Hb_000617_230 0.0790247785 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
6 Hb_000922_360 0.0792770173 - - -
7 Hb_002889_020 0.0793059085 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
8 Hb_003835_070 0.0804520749 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
9 Hb_002456_010 0.0814106011 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
10 Hb_011618_090 0.082932078 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
11 Hb_003528_050 0.0841869407 - - protein transporter, putative [Ricinus communis]
12 Hb_004787_080 0.0852391465 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
13 Hb_000189_600 0.0857338081 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
14 Hb_001430_080 0.0861195644 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
15 Hb_183510_020 0.0864482607 - - coated vesicle membrane protein, putative [Ricinus communis]
16 Hb_001157_160 0.0866330027 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
17 Hb_000107_660 0.0888095458 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
18 Hb_001009_280 0.0896578268 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
19 Hb_002234_090 0.0900074915 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
20 Hb_000510_360 0.0901325925 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]

Gene co-expression network

sample Hb_000565_040 Hb_000565_040 Hb_003544_060 Hb_003544_060 Hb_000565_040--Hb_003544_060 Hb_001878_050 Hb_001878_050 Hb_000565_040--Hb_001878_050 Hb_011671_270 Hb_011671_270 Hb_000565_040--Hb_011671_270 Hb_000617_230 Hb_000617_230 Hb_000565_040--Hb_000617_230 Hb_000922_360 Hb_000922_360 Hb_000565_040--Hb_000922_360 Hb_002889_020 Hb_002889_020 Hb_000565_040--Hb_002889_020 Hb_005918_010 Hb_005918_010 Hb_003544_060--Hb_005918_010 Hb_002456_010 Hb_002456_010 Hb_003544_060--Hb_002456_010 Hb_003906_200 Hb_003906_200 Hb_003544_060--Hb_003906_200 Hb_002234_090 Hb_002234_090 Hb_003544_060--Hb_002234_090 Hb_000836_460 Hb_000836_460 Hb_003544_060--Hb_000836_460 Hb_011618_090 Hb_011618_090 Hb_003544_060--Hb_011618_090 Hb_001878_050--Hb_000617_230 Hb_000402_150 Hb_000402_150 Hb_001878_050--Hb_000402_150 Hb_001878_050--Hb_003544_060 Hb_008114_040 Hb_008114_040 Hb_001878_050--Hb_008114_040 Hb_002344_060 Hb_002344_060 Hb_001878_050--Hb_002344_060 Hb_000510_340 Hb_000510_340 Hb_011671_270--Hb_000510_340 Hb_028960_030 Hb_028960_030 Hb_011671_270--Hb_028960_030 Hb_003528_050 Hb_003528_050 Hb_011671_270--Hb_003528_050 Hb_000352_310 Hb_000352_310 Hb_011671_270--Hb_000352_310 Hb_011224_160 Hb_011224_160 Hb_011671_270--Hb_011224_160 Hb_000189_600 Hb_000189_600 Hb_000617_230--Hb_000189_600 Hb_001430_080 Hb_001430_080 Hb_000617_230--Hb_001430_080 Hb_003835_070 Hb_003835_070 Hb_000617_230--Hb_003835_070 Hb_001279_170 Hb_001279_170 Hb_000617_230--Hb_001279_170 Hb_001009_280 Hb_001009_280 Hb_000617_230--Hb_001009_280 Hb_003464_090 Hb_003464_090 Hb_000922_360--Hb_003464_090 Hb_000922_360--Hb_011618_090 Hb_000011_100 Hb_000011_100 Hb_000922_360--Hb_000011_100 Hb_003370_030 Hb_003370_030 Hb_000922_360--Hb_003370_030 Hb_001006_330 Hb_001006_330 Hb_000922_360--Hb_001006_330 Hb_000922_360--Hb_001430_080 Hb_000003_100 Hb_000003_100 Hb_002889_020--Hb_000003_100 Hb_000331_580 Hb_000331_580 Hb_002889_020--Hb_000331_580 Hb_002889_020--Hb_011618_090 Hb_012286_040 Hb_012286_040 Hb_002889_020--Hb_012286_040 Hb_019840_030 Hb_019840_030 Hb_002889_020--Hb_019840_030 Hb_001167_050 Hb_001167_050 Hb_002889_020--Hb_001167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.606 184.864 129.354 101.231 98.3942 66.4039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.476 82.019 91.5339 187.219 116.685

CAGE analysis