Hb_002344_060

Information

Type -
Description -
Location Contig2344: 60961-64299
Sequence    

Annotation

kegg
ID rcu:RCOM_0711420
description Methylthioribose-1-phosphate isomerase, putative (EC:5.3.1.23)
nr
ID XP_012077066.1
description PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
swissprot
ID B9RR88
description Methylthioribose-1-phosphate isomerase OS=Ricinus communis GN=RCOM_0711420 PE=2 SV=1
trembl
ID A0A067KNQ9
description Methylthioribose-1-phosphate isomerase OS=Jatropha curcas GN=JCGZ_07501 PE=3 SV=1
Gene Ontology
ID GO:0005634
description methylthioribose-1-phosphate isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24582: 60943-64343
cDNA
(Sanger)
(ID:Location)		 005_C16.ab1: 60945-63368 , 015_J12.ab1: 60943-62151 , 032_N01.ab1: 60978-63389 , 034_I03.ab1: 60945-62390

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002344_060 0.0 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
2 Hb_000152_660 0.0752610962 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
3 Hb_001878_050 0.086836177 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
4 Hb_007747_080 0.0873098974 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000441_150 0.0893417253 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_015175_050 0.0905895464 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
7 Hb_011716_070 0.0949699453 transcription factor TF Family: HRT PREDICTED: uncharacterized protein LOC105637858 isoform X1 [Jatropha curcas]
8 Hb_002456_010 0.0978727438 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
9 Hb_003544_060 0.0982242949 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
10 Hb_000402_190 0.0988564843 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
11 Hb_002900_090 0.0989449321 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
12 Hb_000981_030 0.0999036963 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
13 Hb_002391_210 0.1009042154 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
14 Hb_001018_050 0.1012853539 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
15 Hb_007811_050 0.1016604248 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
16 Hb_000739_100 0.1016887886 - - ku P80 DNA helicase, putative [Ricinus communis]
17 Hb_009079_030 0.1025407239 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
18 Hb_004324_130 0.1049095189 - - polypyrimidine tract binding protein, putative [Ricinus communis]
19 Hb_000140_480 0.1053107386 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
20 Hb_000920_300 0.1060746074 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002344_060 Hb_002344_060 Hb_000152_660 Hb_000152_660 Hb_002344_060--Hb_000152_660 Hb_001878_050 Hb_001878_050 Hb_002344_060--Hb_001878_050 Hb_007747_080 Hb_007747_080 Hb_002344_060--Hb_007747_080 Hb_000441_150 Hb_000441_150 Hb_002344_060--Hb_000441_150 Hb_015175_050 Hb_015175_050 Hb_002344_060--Hb_015175_050 Hb_011716_070 Hb_011716_070 Hb_002344_060--Hb_011716_070 Hb_001018_050 Hb_001018_050 Hb_000152_660--Hb_001018_050 Hb_000140_480 Hb_000140_480 Hb_000152_660--Hb_000140_480 Hb_001157_090 Hb_001157_090 Hb_000152_660--Hb_001157_090 Hb_000739_100 Hb_000739_100 Hb_000152_660--Hb_000739_100 Hb_002391_210 Hb_002391_210 Hb_000152_660--Hb_002391_210 Hb_000617_230 Hb_000617_230 Hb_001878_050--Hb_000617_230 Hb_000402_150 Hb_000402_150 Hb_001878_050--Hb_000402_150 Hb_000565_040 Hb_000565_040 Hb_001878_050--Hb_000565_040 Hb_003544_060 Hb_003544_060 Hb_001878_050--Hb_003544_060 Hb_008114_040 Hb_008114_040 Hb_001878_050--Hb_008114_040 Hb_005396_150 Hb_005396_150 Hb_007747_080--Hb_005396_150 Hb_003544_030 Hb_003544_030 Hb_007747_080--Hb_003544_030 Hb_001157_200 Hb_001157_200 Hb_007747_080--Hb_001157_200 Hb_000984_170 Hb_000984_170 Hb_007747_080--Hb_000984_170 Hb_112198_010 Hb_112198_010 Hb_007747_080--Hb_112198_010 Hb_119530_010 Hb_119530_010 Hb_007747_080--Hb_119530_010 Hb_000221_250 Hb_000221_250 Hb_000441_150--Hb_000221_250 Hb_000441_150--Hb_015175_050 Hb_010417_080 Hb_010417_080 Hb_000441_150--Hb_010417_080 Hb_000441_150--Hb_000152_660 Hb_002667_060 Hb_002667_060 Hb_000441_150--Hb_002667_060 Hb_015175_050--Hb_011716_070 Hb_015175_050--Hb_000221_250 Hb_015175_050--Hb_001878_050 Hb_015175_050--Hb_000152_660 Hb_011716_070--Hb_000221_250 Hb_001860_030 Hb_001860_030 Hb_011716_070--Hb_001860_030 Hb_002400_410 Hb_002400_410 Hb_011716_070--Hb_002400_410 Hb_004324_130 Hb_004324_130 Hb_011716_070--Hb_004324_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.2039 45.3705 29.6102 36.3954 20.2603 29.3885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.5692 25.428 25.4408 68.4025 19.9772

CAGE analysis