Hb_001018_050

Information

Type -
Description -
Location Contig1018: 23899-27974
Sequence    

Annotation

kegg
ID rcu:RCOM_0802970
description aspartate aminotransferase, putative (EC:2.6.1.1)
nr
ID XP_012077443.1
description PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
swissprot
ID P46644
description Aspartate aminotransferase 3, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1
trembl
ID A0A067KGW9
description Aspartate aminotransferase OS=Jatropha curcas GN=JCGZ_07779 PE=3 SV=1
Gene Ontology
ID GO:0005777
description aspartate cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00877: 23769-27947 , PASA_asmbl_00878: 25607-25823 , PASA_asmbl_00879: 23769-27938
cDNA
(Sanger)
(ID:Location)		 014_C02.ab1: 26475-27935 , 046_P17.ab1: 26148-27929 , 049_C15.ab1: 27544-27932 , 051_F06.ab1: 26500-27938

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001018_050 0.0 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
2 Hb_000152_660 0.0641327175 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
3 Hb_001252_120 0.0880878548 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
4 Hb_001157_090 0.0895467738 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
5 Hb_073973_100 0.0900818151 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
6 Hb_000903_060 0.0967785788 - - PREDICTED: ras-related protein RABA5e [Jatropha curcas]
7 Hb_010142_030 0.0979777159 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000739_100 0.0991695789 - - ku P80 DNA helicase, putative [Ricinus communis]
9 Hb_000028_180 0.0993901015 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
10 Hb_001021_080 0.0998075452 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
11 Hb_002471_290 0.1000257501 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
12 Hb_000556_120 0.1011354645 - - Spastin, putative [Ricinus communis]
13 Hb_002344_060 0.1012853539 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
14 Hb_000676_190 0.1030579924 - - hypothetical protein JCGZ_08279 [Jatropha curcas]
15 Hb_002889_030 0.1036195036 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
16 Hb_000140_480 0.1048846556 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
17 Hb_165928_030 0.1051278261 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006913_010 0.1083605848 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
19 Hb_002481_080 0.1094597543 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
20 Hb_000252_200 0.1102193655 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001018_050 Hb_001018_050 Hb_000152_660 Hb_000152_660 Hb_001018_050--Hb_000152_660 Hb_001252_120 Hb_001252_120 Hb_001018_050--Hb_001252_120 Hb_001157_090 Hb_001157_090 Hb_001018_050--Hb_001157_090 Hb_073973_100 Hb_073973_100 Hb_001018_050--Hb_073973_100 Hb_000903_060 Hb_000903_060 Hb_001018_050--Hb_000903_060 Hb_010142_030 Hb_010142_030 Hb_001018_050--Hb_010142_030 Hb_002344_060 Hb_002344_060 Hb_000152_660--Hb_002344_060 Hb_000140_480 Hb_000140_480 Hb_000152_660--Hb_000140_480 Hb_000152_660--Hb_001157_090 Hb_000739_100 Hb_000739_100 Hb_000152_660--Hb_000739_100 Hb_002391_210 Hb_002391_210 Hb_000152_660--Hb_002391_210 Hb_000028_180 Hb_000028_180 Hb_001252_120--Hb_000028_180 Hb_008725_230 Hb_008725_230 Hb_001252_120--Hb_008725_230 Hb_000556_120 Hb_000556_120 Hb_001252_120--Hb_000556_120 Hb_004324_130 Hb_004324_130 Hb_001252_120--Hb_004324_130 Hb_001584_120 Hb_001584_120 Hb_001252_120--Hb_001584_120 Hb_022115_020 Hb_022115_020 Hb_001252_120--Hb_022115_020 Hb_001157_090--Hb_000739_100 Hb_001157_090--Hb_000028_180 Hb_001157_090--Hb_001252_120 Hb_002784_020 Hb_002784_020 Hb_001157_090--Hb_002784_020 Hb_001157_090--Hb_004324_130 Hb_017862_020 Hb_017862_020 Hb_001157_090--Hb_017862_020 Hb_003376_330 Hb_003376_330 Hb_073973_100--Hb_003376_330 Hb_000270_490 Hb_000270_490 Hb_073973_100--Hb_000270_490 Hb_073973_100--Hb_000556_120 Hb_002000_080 Hb_002000_080 Hb_073973_100--Hb_002000_080 Hb_023732_030 Hb_023732_030 Hb_073973_100--Hb_023732_030 Hb_165928_030 Hb_165928_030 Hb_073973_100--Hb_165928_030 Hb_004734_040 Hb_004734_040 Hb_000903_060--Hb_004734_040 Hb_000903_060--Hb_023732_030 Hb_000903_060--Hb_073973_100 Hb_002197_050 Hb_002197_050 Hb_000903_060--Hb_002197_050 Hb_000903_060--Hb_000556_120 Hb_003693_070 Hb_003693_070 Hb_010142_030--Hb_003693_070 Hb_000120_060 Hb_000120_060 Hb_010142_030--Hb_000120_060 Hb_000023_280 Hb_000023_280 Hb_010142_030--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_010142_030--Hb_000116_410 Hb_003940_040 Hb_003940_040 Hb_010142_030--Hb_003940_040 Hb_001635_090 Hb_001635_090 Hb_010142_030--Hb_001635_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.4395 20.9575 17.4446 25.3785 18.8468 20.4912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9269 21.3931 30.4664 49.3821 10.3524

CAGE analysis