Hb_004734_040

Information

Type -
Description -
Location Contig4734: 47303-50520
Sequence    

Annotation

kegg
ID tcc:TCM_037062
description Eukaryotic translation initiation factor 5A-1
nr
ID AAQ08191.1
description eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
swissprot
ID Q9AXJ4
description Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2
trembl
ID Q71F50
description Eukaryotic translation initiation factor 5A OS=Hevea brasiliensis GN=eIF-5A PE=2 SV=1
Gene Ontology
ID GO:0003746
description eukaryotic translation initiation factor 5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44436: 47296-50446 , PASA_asmbl_44437: 47398-50445
cDNA
(Sanger)
(ID:Location)		 001_I01.ab1: 47402-50396 , 003_G05.ab1: 47398-50398 , 016_A16.ab1: 47296-50272 , 039_K09.ab1: 47402-50354 , 047_K12.ab1: 47398-50327

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004734_040 0.0 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
2 Hb_005391_040 0.073596827 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
3 Hb_000903_060 0.0849255967 - - PREDICTED: ras-related protein RABA5e [Jatropha curcas]
4 Hb_001653_020 0.086669244 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
5 Hb_007894_060 0.0880053832 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
6 Hb_001301_110 0.0885095279 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
7 Hb_000665_050 0.0900540875 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
8 Hb_089995_010 0.0905492512 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
9 Hb_000210_120 0.0907551029 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
10 Hb_007928_030 0.0940997623 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
11 Hb_029584_050 0.0946430202 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
12 Hb_000948_160 0.0986421399 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
13 Hb_001369_250 0.1018756967 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
14 Hb_000331_470 0.1027939992 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
15 Hb_008173_110 0.1036739874 - - DNA binding protein, putative [Ricinus communis]
16 Hb_000015_040 0.1045453164 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
17 Hb_062226_140 0.106767243 - - PREDICTED: protein NEDD1 [Jatropha curcas]
18 Hb_008695_050 0.1070288625 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001215_040 0.1080384748 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000431_170 0.1085093623 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]

Gene co-expression network

sample Hb_004734_040 Hb_004734_040 Hb_005391_040 Hb_005391_040 Hb_004734_040--Hb_005391_040 Hb_000903_060 Hb_000903_060 Hb_004734_040--Hb_000903_060 Hb_001653_020 Hb_001653_020 Hb_004734_040--Hb_001653_020 Hb_007894_060 Hb_007894_060 Hb_004734_040--Hb_007894_060 Hb_001301_110 Hb_001301_110 Hb_004734_040--Hb_001301_110 Hb_000665_050 Hb_000665_050 Hb_004734_040--Hb_000665_050 Hb_150651_040 Hb_150651_040 Hb_005391_040--Hb_150651_040 Hb_089995_010 Hb_089995_010 Hb_005391_040--Hb_089995_010 Hb_005391_040--Hb_007894_060 Hb_007928_030 Hb_007928_030 Hb_005391_040--Hb_007928_030 Hb_000465_390 Hb_000465_390 Hb_005391_040--Hb_000465_390 Hb_023732_030 Hb_023732_030 Hb_000903_060--Hb_023732_030 Hb_073973_100 Hb_073973_100 Hb_000903_060--Hb_073973_100 Hb_001018_050 Hb_001018_050 Hb_000903_060--Hb_001018_050 Hb_002197_050 Hb_002197_050 Hb_000903_060--Hb_002197_050 Hb_000556_120 Hb_000556_120 Hb_000903_060--Hb_000556_120 Hb_002061_040 Hb_002061_040 Hb_001653_020--Hb_002061_040 Hb_000414_130 Hb_000414_130 Hb_001653_020--Hb_000414_130 Hb_008173_110 Hb_008173_110 Hb_001653_020--Hb_008173_110 Hb_003787_010 Hb_003787_010 Hb_001653_020--Hb_003787_010 Hb_001215_040 Hb_001215_040 Hb_001653_020--Hb_001215_040 Hb_003918_010 Hb_003918_010 Hb_001653_020--Hb_003918_010 Hb_007894_060--Hb_007928_030 Hb_000538_120 Hb_000538_120 Hb_007894_060--Hb_000538_120 Hb_007894_060--Hb_001301_110 Hb_002301_150 Hb_002301_150 Hb_007894_060--Hb_002301_150 Hb_000136_260 Hb_000136_260 Hb_007894_060--Hb_000136_260 Hb_000069_720 Hb_000069_720 Hb_007894_060--Hb_000069_720 Hb_001301_110--Hb_000069_720 Hb_004157_050 Hb_004157_050 Hb_001301_110--Hb_004157_050 Hb_005588_060 Hb_005588_060 Hb_001301_110--Hb_005588_060 Hb_000665_140 Hb_000665_140 Hb_001301_110--Hb_000665_140 Hb_000167_010 Hb_000167_010 Hb_001301_110--Hb_000167_010 Hb_005306_180 Hb_005306_180 Hb_000665_050--Hb_005306_180 Hb_001218_030 Hb_001218_030 Hb_000665_050--Hb_001218_030 Hb_000665_050--Hb_000414_130 Hb_000665_050--Hb_001301_110 Hb_000460_030 Hb_000460_030 Hb_000665_050--Hb_000460_030 Hb_000853_150 Hb_000853_150 Hb_000665_050--Hb_000853_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
289.612 276.335 286.594 415.726 213.39 279.441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
779.924 610.046 279.872 623.938 257.886

CAGE analysis