Hb_000414_130

Information

Type -
Description -
Location Contig414: 255646-258721
Sequence    

Annotation

kegg
ID tcc:TCM_006700
description ER lumen protein retaining receptor family protein isoform 1
nr
ID XP_012084391.1
description PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
swissprot
ID Q611C8
description ER lumen protein-retaining receptor OS=Caenorhabditis briggsae GN=erd-2 PE=3 SV=1
trembl
ID A0A067JXP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19598 PE=4 SV=1
Gene Ontology
ID GO:0005783
description er lumen protein retaining receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41007: 255792-258652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000414_130 0.0 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
2 Hb_001653_020 0.0761680962 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
3 Hb_015778_010 0.0791511396 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
4 Hb_000665_050 0.0816188816 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
5 Hb_000030_030 0.0901900843 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
6 Hb_003502_060 0.090495212 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
7 Hb_005306_180 0.0910503004 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
8 Hb_000329_110 0.0911125254 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
9 Hb_000645_090 0.0915817744 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029584_050 0.0916137776 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
11 Hb_011344_190 0.0922366332 - - PREDICTED: maspardin [Jatropha curcas]
12 Hb_002007_210 0.0930052414 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
13 Hb_011344_120 0.09491235 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
14 Hb_001703_060 0.094999754 - - protein kinase, putative [Ricinus communis]
15 Hb_000363_360 0.0960234987 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
16 Hb_008695_050 0.0962347895 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006420_080 0.0997930409 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_018124_010 0.1021304597 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
19 Hb_001222_080 0.1026825921 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
20 Hb_089032_030 0.1029357425 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000414_130 Hb_000414_130 Hb_001653_020 Hb_001653_020 Hb_000414_130--Hb_001653_020 Hb_015778_010 Hb_015778_010 Hb_000414_130--Hb_015778_010 Hb_000665_050 Hb_000665_050 Hb_000414_130--Hb_000665_050 Hb_000030_030 Hb_000030_030 Hb_000414_130--Hb_000030_030 Hb_003502_060 Hb_003502_060 Hb_000414_130--Hb_003502_060 Hb_005306_180 Hb_005306_180 Hb_000414_130--Hb_005306_180 Hb_002061_040 Hb_002061_040 Hb_001653_020--Hb_002061_040 Hb_008173_110 Hb_008173_110 Hb_001653_020--Hb_008173_110 Hb_003787_010 Hb_003787_010 Hb_001653_020--Hb_003787_010 Hb_001215_040 Hb_001215_040 Hb_001653_020--Hb_001215_040 Hb_003918_010 Hb_003918_010 Hb_001653_020--Hb_003918_010 Hb_002007_210 Hb_002007_210 Hb_015778_010--Hb_002007_210 Hb_006420_080 Hb_006420_080 Hb_015778_010--Hb_006420_080 Hb_015778_010--Hb_003502_060 Hb_015778_010--Hb_005306_180 Hb_011344_190 Hb_011344_190 Hb_015778_010--Hb_011344_190 Hb_000665_050--Hb_005306_180 Hb_001218_030 Hb_001218_030 Hb_000665_050--Hb_001218_030 Hb_001301_110 Hb_001301_110 Hb_000665_050--Hb_001301_110 Hb_000460_030 Hb_000460_030 Hb_000665_050--Hb_000460_030 Hb_000853_150 Hb_000853_150 Hb_000665_050--Hb_000853_150 Hb_005846_040 Hb_005846_040 Hb_000030_030--Hb_005846_040 Hb_001703_060 Hb_001703_060 Hb_000030_030--Hb_001703_060 Hb_000030_030--Hb_003502_060 Hb_002232_410 Hb_002232_410 Hb_000030_030--Hb_002232_410 Hb_003151_040 Hb_003151_040 Hb_000030_030--Hb_003151_040 Hb_168978_010 Hb_168978_010 Hb_000030_030--Hb_168978_010 Hb_008013_050 Hb_008013_050 Hb_003502_060--Hb_008013_050 Hb_002301_150 Hb_002301_150 Hb_003502_060--Hb_002301_150 Hb_089032_030 Hb_089032_030 Hb_003502_060--Hb_089032_030 Hb_003502_060--Hb_003151_040 Hb_000483_260 Hb_000483_260 Hb_005306_180--Hb_000483_260 Hb_000787_020 Hb_000787_020 Hb_005306_180--Hb_000787_020 Hb_001016_120 Hb_001016_120 Hb_005306_180--Hb_001016_120 Hb_002014_020 Hb_002014_020 Hb_005306_180--Hb_002014_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5141 15.8885 13.0545 34.5894 13.1942 17.2591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4798 31.9829 30.3989 29.1267 12.1967

CAGE analysis