Hb_000538_120

Information

Type transcription factor
Description TF Family: SET
Location Contig538: 118868-122220
Sequence    

Annotation

kegg
ID rcu:RCOM_1123320
description Protein SET DOMAIN GROUP, putative
nr
ID XP_012074708.1
description PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
swissprot
ID Q6NQJ8
description Protein SET DOMAIN GROUP 40 OS=Arabidopsis thaliana GN=SDG40 PE=2 SV=1
trembl
ID A0A067KHN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10483 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47655: 118979-122214 , PASA_asmbl_47656: 120831-121284
cDNA
(Sanger)
(ID:Location)		 004_N01.ab1: 120636-122214 , 023_P08.ab1: 120744-122214

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_120 0.0 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
2 Hb_007894_060 0.0603272446 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
3 Hb_000136_260 0.0644024205 - - 40S ribosomal protein S5A [Hevea brasiliensis]
4 Hb_000302_140 0.0678977983 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
5 Hb_007928_030 0.0680382101 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
6 Hb_000571_020 0.0699728994 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
7 Hb_000413_280 0.0721014636 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
8 Hb_028396_010 0.0732176454 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
9 Hb_000136_350 0.0753288634 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
10 Hb_006326_040 0.0764811048 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000085_350 0.0765120679 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
12 Hb_186982_040 0.0765743819 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
13 Hb_001341_150 0.0774763979 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
14 Hb_001931_010 0.0809500273 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
15 Hb_006573_190 0.083676232 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
16 Hb_000419_020 0.0844317666 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_007894_170 0.084468244 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
18 Hb_000045_310 0.088191734 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
19 Hb_002811_170 0.0887511543 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
20 Hb_004586_420 0.0890991591 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]

Gene co-expression network

sample Hb_000538_120 Hb_000538_120 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000136_260 Hb_000136_260 Hb_000538_120--Hb_000136_260 Hb_000302_140 Hb_000302_140 Hb_000538_120--Hb_000302_140 Hb_007928_030 Hb_007928_030 Hb_000538_120--Hb_007928_030 Hb_000571_020 Hb_000571_020 Hb_000538_120--Hb_000571_020 Hb_000413_280 Hb_000413_280 Hb_000538_120--Hb_000413_280 Hb_007894_060--Hb_007928_030 Hb_001301_110 Hb_001301_110 Hb_007894_060--Hb_001301_110 Hb_002301_150 Hb_002301_150 Hb_007894_060--Hb_002301_150 Hb_007894_060--Hb_000136_260 Hb_000069_720 Hb_000069_720 Hb_007894_060--Hb_000069_720 Hb_002078_140 Hb_002078_140 Hb_000136_260--Hb_002078_140 Hb_000099_150 Hb_000099_150 Hb_000136_260--Hb_000099_150 Hb_000419_020 Hb_000419_020 Hb_000136_260--Hb_000419_020 Hb_000136_350 Hb_000136_350 Hb_000136_260--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_000136_260--Hb_004109_340 Hb_000302_140--Hb_000571_020 Hb_001341_150 Hb_001341_150 Hb_000302_140--Hb_001341_150 Hb_000085_350 Hb_000085_350 Hb_000302_140--Hb_000085_350 Hb_000302_140--Hb_000413_280 Hb_028396_010 Hb_028396_010 Hb_000302_140--Hb_028396_010 Hb_011344_120 Hb_011344_120 Hb_007928_030--Hb_011344_120 Hb_001386_040 Hb_001386_040 Hb_007928_030--Hb_001386_040 Hb_000431_170 Hb_000431_170 Hb_007928_030--Hb_000431_170 Hb_005914_170 Hb_005914_170 Hb_007928_030--Hb_005914_170 Hb_001329_150 Hb_001329_150 Hb_000571_020--Hb_001329_150 Hb_000254_050 Hb_000254_050 Hb_000571_020--Hb_000254_050 Hb_000189_240 Hb_000189_240 Hb_000571_020--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000571_020--Hb_000731_190 Hb_011671_440 Hb_011671_440 Hb_000413_280--Hb_011671_440 Hb_002016_080 Hb_002016_080 Hb_000413_280--Hb_002016_080 Hb_000413_280--Hb_000571_020 Hb_004705_080 Hb_004705_080 Hb_000413_280--Hb_004705_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.26743 5.8833 11.1923 12.4547 4.80975 6.1795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4951 21.6604 10.6642 12.8007 7.11162

CAGE analysis