Hb_000136_350

Information

Type -
Description -
Location Contig136: 341989-345017
Sequence    

Annotation

kegg
ID nle:100581885
description RPS5; ribosomal protein S5
nr
ID XP_003277344.1
description PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
swissprot
ID -
description -
trembl
ID H9FBS9
description 40S ribosomal protein S5 (Fragment) OS=Macaca mulatta GN=RPS5 PE=2 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000136_350 0.0 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
2 Hb_186982_040 0.0542164984 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
3 Hb_003098_020 0.0701976934 - - 40S ribosomal protein S5B [Hevea brasiliensis]
4 Hb_000136_260 0.0722464875 - - 40S ribosomal protein S5A [Hevea brasiliensis]
5 Hb_000538_120 0.0753288634 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
6 Hb_000377_120 0.0809190241 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000419_020 0.0811170299 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_005914_170 0.0833308999 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
9 Hb_000210_120 0.0872493709 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
10 Hb_007928_030 0.0876611704 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
11 Hb_004109_340 0.0890995575 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
12 Hb_000922_040 0.090605117 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
13 Hb_005305_150 0.0911921926 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
14 Hb_002631_180 0.0917172 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
15 Hb_004586_420 0.0932508745 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
16 Hb_007747_050 0.0950769942 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
17 Hb_000735_090 0.0972842456 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
18 Hb_004767_080 0.0978741148 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
19 Hb_089032_030 0.0991701173 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
20 Hb_007894_060 0.0992511376 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]

Gene co-expression network

sample Hb_000136_350 Hb_000136_350 Hb_186982_040 Hb_186982_040 Hb_000136_350--Hb_186982_040 Hb_003098_020 Hb_003098_020 Hb_000136_350--Hb_003098_020 Hb_000136_260 Hb_000136_260 Hb_000136_350--Hb_000136_260 Hb_000538_120 Hb_000538_120 Hb_000136_350--Hb_000538_120 Hb_000377_120 Hb_000377_120 Hb_000136_350--Hb_000377_120 Hb_000419_020 Hb_000419_020 Hb_000136_350--Hb_000419_020 Hb_186982_040--Hb_003098_020 Hb_186982_040--Hb_000538_120 Hb_007928_030 Hb_007928_030 Hb_186982_040--Hb_007928_030 Hb_005307_050 Hb_005307_050 Hb_186982_040--Hb_005307_050 Hb_004109_340 Hb_004109_340 Hb_186982_040--Hb_004109_340 Hb_005305_150 Hb_005305_150 Hb_003098_020--Hb_005305_150 Hb_000210_120 Hb_000210_120 Hb_003098_020--Hb_000210_120 Hb_000896_040 Hb_000896_040 Hb_003098_020--Hb_000896_040 Hb_005914_170 Hb_005914_170 Hb_003098_020--Hb_005914_170 Hb_000136_260--Hb_000538_120 Hb_002078_140 Hb_002078_140 Hb_000136_260--Hb_002078_140 Hb_000099_150 Hb_000099_150 Hb_000136_260--Hb_000099_150 Hb_000136_260--Hb_000419_020 Hb_000136_260--Hb_004109_340 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000302_140 Hb_000302_140 Hb_000538_120--Hb_000302_140 Hb_000538_120--Hb_007928_030 Hb_000571_020 Hb_000571_020 Hb_000538_120--Hb_000571_020 Hb_000413_280 Hb_000413_280 Hb_000538_120--Hb_000413_280 Hb_001410_060 Hb_001410_060 Hb_000377_120--Hb_001410_060 Hb_000077_180 Hb_000077_180 Hb_000377_120--Hb_000077_180 Hb_000116_040 Hb_000116_040 Hb_000377_120--Hb_000116_040 Hb_000922_040 Hb_000922_040 Hb_000377_120--Hb_000922_040 Hb_000377_120--Hb_186982_040 Hb_007747_050 Hb_007747_050 Hb_000419_020--Hb_007747_050 Hb_000155_160 Hb_000155_160 Hb_000419_020--Hb_000155_160 Hb_002811_170 Hb_002811_170 Hb_000419_020--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_000419_020--Hb_000946_090 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6811 25.1576 33.4206 58.837 16.7023 32.8322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.1935 103.281 45.4412 65.4262 34.8717

CAGE analysis