Hb_000116_040

Information

Type -
Description -
Location Contig116: 35729-37003
Sequence    

Annotation

kegg
ID vvi:100854216
description phosphoserine aminotransferase 2, chloroplastic-like
nr
ID XP_012065373.1
description PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q96255
description Phosphoserine aminotransferase 1, chloroplastic OS=Arabidopsis thaliana GN=PSAT1 PE=1 SV=1
trembl
ID A0A067LGT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22377 PE=3 SV=1
Gene Ontology
ID GO:0004648
description phosphoserine aminotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04808: 35331-37087 , PASA_asmbl_04810: 37546-40488
cDNA
(Sanger)
(ID:Location)		 002_K05.ab1: 36364-37103 , 036_P07.ab1: 36319-37087 , 041_J02.ab1: 36598-37087

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_040 0.0 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
2 Hb_000377_120 0.0849576931 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_027684_020 0.1097796178 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
4 Hb_001269_490 0.1174505689 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008772_010 0.1201927308 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001410_060 0.1245495075 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
7 Hb_000136_350 0.1282412072 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
8 Hb_002235_080 0.130541645 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
9 Hb_001369_170 0.1322998667 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
10 Hb_003929_150 0.1333745764 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
11 Hb_000922_040 0.1355060298 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
12 Hb_000788_010 0.1362546887 - - 40S ribosomal protein S16A [Hevea brasiliensis]
13 Hb_000302_280 0.1384653817 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
14 Hb_000896_040 0.1392235749 - - BnaC02g13240D [Brassica napus]
15 Hb_005306_070 0.1401418229 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
16 Hb_000077_180 0.1403182378 - - -
17 Hb_004543_040 0.1413939302 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000099_070 0.1416639706 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
19 Hb_017491_020 0.1420447553 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
20 Hb_000735_090 0.1433241449 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]

Gene co-expression network

sample Hb_000116_040 Hb_000116_040 Hb_000377_120 Hb_000377_120 Hb_000116_040--Hb_000377_120 Hb_027684_020 Hb_027684_020 Hb_000116_040--Hb_027684_020 Hb_001269_490 Hb_001269_490 Hb_000116_040--Hb_001269_490 Hb_008772_010 Hb_008772_010 Hb_000116_040--Hb_008772_010 Hb_001410_060 Hb_001410_060 Hb_000116_040--Hb_001410_060 Hb_000136_350 Hb_000136_350 Hb_000116_040--Hb_000136_350 Hb_000377_120--Hb_001410_060 Hb_000377_120--Hb_000136_350 Hb_000077_180 Hb_000077_180 Hb_000377_120--Hb_000077_180 Hb_000922_040 Hb_000922_040 Hb_000377_120--Hb_000922_040 Hb_186982_040 Hb_186982_040 Hb_000377_120--Hb_186982_040 Hb_027684_020--Hb_001269_490 Hb_000997_120 Hb_000997_120 Hb_027684_020--Hb_000997_120 Hb_002838_030 Hb_002838_030 Hb_027684_020--Hb_002838_030 Hb_004125_110 Hb_004125_110 Hb_027684_020--Hb_004125_110 Hb_007120_090 Hb_007120_090 Hb_027684_020--Hb_007120_090 Hb_001269_490--Hb_002838_030 Hb_001269_490--Hb_000997_120 Hb_004543_040 Hb_004543_040 Hb_001269_490--Hb_004543_040 Hb_001269_490--Hb_004125_110 Hb_006478_160 Hb_006478_160 Hb_008772_010--Hb_006478_160 Hb_150196_010 Hb_150196_010 Hb_008772_010--Hb_150196_010 Hb_012760_070 Hb_012760_070 Hb_008772_010--Hb_012760_070 Hb_000215_060 Hb_000215_060 Hb_008772_010--Hb_000215_060 Hb_000115_230 Hb_000115_230 Hb_008772_010--Hb_000115_230 Hb_000450_130 Hb_000450_130 Hb_008772_010--Hb_000450_130 Hb_000563_200 Hb_000563_200 Hb_001410_060--Hb_000563_200 Hb_001410_060--Hb_000922_040 Hb_003880_040 Hb_003880_040 Hb_001410_060--Hb_003880_040 Hb_005306_070 Hb_005306_070 Hb_001410_060--Hb_005306_070 Hb_005269_080 Hb_005269_080 Hb_001410_060--Hb_005269_080 Hb_000136_350--Hb_186982_040 Hb_003098_020 Hb_003098_020 Hb_000136_350--Hb_003098_020 Hb_000136_260 Hb_000136_260 Hb_000136_350--Hb_000136_260 Hb_000538_120 Hb_000538_120 Hb_000136_350--Hb_000538_120 Hb_000419_020 Hb_000419_020 Hb_000136_350--Hb_000419_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.2305 46.1772 41.1242 132.497 31.5252 39.5984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.192 273.958 85.2671 120.819 28.2375

CAGE analysis