Hb_001269_490

Information

Type -
Description -
Location Contig1269: 521653-523661
Sequence    

Annotation

kegg
ID rcu:RCOM_1441570
description hypothetical protein
nr
ID XP_002512721.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SAH5
description Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Arabidopsis thaliana GN=PLMT PE=2 SV=1
trembl
ID B9RGL2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1441570 PE=4 SV=1
Gene Ontology
ID GO:0009507
description phosphatidyl-n-methylethanolamine n-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08219: 521520-523656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_490 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_027684_020 0.0828785893 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
3 Hb_002838_030 0.0949390257 - - 40S ribosomal protein S25A [Hevea brasiliensis]
4 Hb_000997_120 0.0953228082 - - 40S ribosomal protein S15E [Hevea brasiliensis]
5 Hb_004543_040 0.1055432332 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_000116_040 0.1174505689 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
7 Hb_004125_110 0.1181325807 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
8 Hb_000915_120 0.1191765544 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
9 Hb_007120_090 0.1209627946 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
10 Hb_001369_170 0.1278507704 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
11 Hb_012395_130 0.1291321764 - - Os02g0814700 [Oryza sativa Japonica Group]
12 Hb_000302_280 0.1329328679 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
13 Hb_001789_050 0.1342995385 - - 60S ribosomal protein L36-2 [Morus notabilis]
14 Hb_007245_080 0.1343813136 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
15 Hb_003020_330 0.135009925 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
16 Hb_001565_080 0.1358558851 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
17 Hb_000230_150 0.1364380964 - - sugar transporter, putative [Ricinus communis]
18 Hb_002235_080 0.1373525102 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
19 Hb_000450_130 0.1397714883 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
20 Hb_004735_050 0.1401440861 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_490 Hb_001269_490 Hb_027684_020 Hb_027684_020 Hb_001269_490--Hb_027684_020 Hb_002838_030 Hb_002838_030 Hb_001269_490--Hb_002838_030 Hb_000997_120 Hb_000997_120 Hb_001269_490--Hb_000997_120 Hb_004543_040 Hb_004543_040 Hb_001269_490--Hb_004543_040 Hb_000116_040 Hb_000116_040 Hb_001269_490--Hb_000116_040 Hb_004125_110 Hb_004125_110 Hb_001269_490--Hb_004125_110 Hb_027684_020--Hb_000997_120 Hb_027684_020--Hb_002838_030 Hb_027684_020--Hb_004125_110 Hb_027684_020--Hb_000116_040 Hb_007120_090 Hb_007120_090 Hb_027684_020--Hb_007120_090 Hb_002838_030--Hb_000997_120 Hb_002838_030--Hb_007120_090 Hb_000915_120 Hb_000915_120 Hb_002838_030--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_002838_030--Hb_000948_220 Hb_003020_330 Hb_003020_330 Hb_002838_030--Hb_003020_330 Hb_000087_130 Hb_000087_130 Hb_002838_030--Hb_000087_130 Hb_000997_120--Hb_007120_090 Hb_012395_130 Hb_012395_130 Hb_000997_120--Hb_012395_130 Hb_000997_120--Hb_004543_040 Hb_000997_120--Hb_004125_110 Hb_086639_090 Hb_086639_090 Hb_004543_040--Hb_086639_090 Hb_091433_020 Hb_091433_020 Hb_004543_040--Hb_091433_020 Hb_001369_170 Hb_001369_170 Hb_004543_040--Hb_001369_170 Hb_000496_120 Hb_000496_120 Hb_004543_040--Hb_000496_120 Hb_006478_150 Hb_006478_150 Hb_004543_040--Hb_006478_150 Hb_000377_120 Hb_000377_120 Hb_000116_040--Hb_000377_120 Hb_008772_010 Hb_008772_010 Hb_000116_040--Hb_008772_010 Hb_001410_060 Hb_001410_060 Hb_000116_040--Hb_001410_060 Hb_000136_350 Hb_000136_350 Hb_000116_040--Hb_000136_350 Hb_003018_050 Hb_003018_050 Hb_004125_110--Hb_003018_050 Hb_003226_210 Hb_003226_210 Hb_004125_110--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_004125_110--Hb_001214_160 Hb_000134_070 Hb_000134_070 Hb_004125_110--Hb_000134_070 Hb_002660_030 Hb_002660_030 Hb_004125_110--Hb_002660_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44973 3.41179 2.41377 9.48399 1.72932 4.5173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.115 29.2401 7.85124 9.11866 1.38028

CAGE analysis