Hb_027684_020

Information

Type -
Description -
Location Contig27684: 33275-35075
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013702mg
description hypothetical protein
nr
ID BAD83460.2
description ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
swissprot
ID P51428
description Ribosomal protein S10, mitochondrial OS=Pisum sativum GN=RPS10 PE=2 SV=1
trembl
ID Q5MA18
description Ribosomal protein S10 OS=Nicotiana tabacum GN=rps10 PE=4 SV=2
Gene Ontology
ID GO:0005739
description ribosomal protein s10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28942: 33556-35057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027684_020 0.0 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
2 Hb_001269_490 0.0828785893 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000997_120 0.0854773357 - - 40S ribosomal protein S15E [Hevea brasiliensis]
4 Hb_002838_030 0.0975219507 - - 40S ribosomal protein S25A [Hevea brasiliensis]
5 Hb_004125_110 0.1046307045 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
6 Hb_000116_040 0.1097796178 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
7 Hb_007120_090 0.1101531875 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
8 Hb_003376_190 0.1112433074 - - syntaxin, putative [Ricinus communis]
9 Hb_004543_040 0.111268188 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_001635_130 0.1122010814 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
11 Hb_006915_040 0.1160396521 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
12 Hb_000377_120 0.1172056067 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_000302_280 0.117887834 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
14 Hb_130235_010 0.1208887572 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
15 Hb_000768_130 0.1213257294 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
16 Hb_001410_060 0.1264210537 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
17 Hb_006573_020 0.1264436567 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
18 Hb_005306_070 0.1275247119 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
19 Hb_000215_330 0.1275839898 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
20 Hb_001789_050 0.1281821194 - - 60S ribosomal protein L36-2 [Morus notabilis]

Gene co-expression network

sample Hb_027684_020 Hb_027684_020 Hb_001269_490 Hb_001269_490 Hb_027684_020--Hb_001269_490 Hb_000997_120 Hb_000997_120 Hb_027684_020--Hb_000997_120 Hb_002838_030 Hb_002838_030 Hb_027684_020--Hb_002838_030 Hb_004125_110 Hb_004125_110 Hb_027684_020--Hb_004125_110 Hb_000116_040 Hb_000116_040 Hb_027684_020--Hb_000116_040 Hb_007120_090 Hb_007120_090 Hb_027684_020--Hb_007120_090 Hb_001269_490--Hb_002838_030 Hb_001269_490--Hb_000997_120 Hb_004543_040 Hb_004543_040 Hb_001269_490--Hb_004543_040 Hb_001269_490--Hb_000116_040 Hb_001269_490--Hb_004125_110 Hb_000997_120--Hb_007120_090 Hb_000997_120--Hb_002838_030 Hb_012395_130 Hb_012395_130 Hb_000997_120--Hb_012395_130 Hb_000997_120--Hb_004543_040 Hb_000997_120--Hb_004125_110 Hb_002838_030--Hb_007120_090 Hb_000915_120 Hb_000915_120 Hb_002838_030--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_002838_030--Hb_000948_220 Hb_003020_330 Hb_003020_330 Hb_002838_030--Hb_003020_330 Hb_000087_130 Hb_000087_130 Hb_002838_030--Hb_000087_130 Hb_003018_050 Hb_003018_050 Hb_004125_110--Hb_003018_050 Hb_003226_210 Hb_003226_210 Hb_004125_110--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_004125_110--Hb_001214_160 Hb_000134_070 Hb_000134_070 Hb_004125_110--Hb_000134_070 Hb_002660_030 Hb_002660_030 Hb_004125_110--Hb_002660_030 Hb_000377_120 Hb_000377_120 Hb_000116_040--Hb_000377_120 Hb_008772_010 Hb_008772_010 Hb_000116_040--Hb_008772_010 Hb_001410_060 Hb_001410_060 Hb_000116_040--Hb_001410_060 Hb_000136_350 Hb_000136_350 Hb_000116_040--Hb_000136_350 Hb_001789_050 Hb_001789_050 Hb_007120_090--Hb_001789_050 Hb_007120_090--Hb_000948_220 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160 Hb_007120_090--Hb_012395_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3664 9.38725 10.0791 38.3633 5.95605 19.6506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.4946 80.7013 19.3971 26.1566 7.91604

CAGE analysis