Hb_000377_120

Information

Type -
Description -
Location Contig377: 205335-207476
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00750g
description POPTRDRAFT_652365; hypothetical protein
nr
ID XP_012074793.1
description PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q9FGJ4
description Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=2 SV=1
trembl
ID A0A067KUH7
description Acyl carrier protein OS=Jatropha curcas GN=JCGZ_08947 PE=3 SV=1
Gene Ontology
ID GO:0006633
description acyl carrier protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38407: 205373-207229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000377_120 0.0 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_001410_060 0.0706336002 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
3 Hb_000136_350 0.0809190241 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
4 Hb_000077_180 0.082210453 - - -
5 Hb_000116_040 0.0849576931 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
6 Hb_000922_040 0.0860116469 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
7 Hb_186982_040 0.0932400951 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
8 Hb_005269_080 0.0965964176 - - protein with unknown function [Ricinus communis]
9 Hb_000009_290 0.097595765 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
10 Hb_005306_070 0.0985646901 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
11 Hb_000896_040 0.0990173201 - - BnaC02g13240D [Brassica napus]
12 Hb_000163_050 0.0997527877 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
13 Hb_003098_020 0.1057422084 - - 40S ribosomal protein S5B [Hevea brasiliensis]
14 Hb_017491_020 0.1070638939 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
15 Hb_000538_120 0.1074303003 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
16 Hb_003929_150 0.1082637815 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
17 Hb_009075_010 0.1087446448 - - 60S ribosomal protein L10B [Hevea brasiliensis]
18 Hb_000739_140 0.1101622999 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
19 Hb_000136_260 0.1120681076 - - 40S ribosomal protein S5A [Hevea brasiliensis]
20 Hb_001718_030 0.1149564304 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000377_120 Hb_000377_120 Hb_001410_060 Hb_001410_060 Hb_000377_120--Hb_001410_060 Hb_000136_350 Hb_000136_350 Hb_000377_120--Hb_000136_350 Hb_000077_180 Hb_000077_180 Hb_000377_120--Hb_000077_180 Hb_000116_040 Hb_000116_040 Hb_000377_120--Hb_000116_040 Hb_000922_040 Hb_000922_040 Hb_000377_120--Hb_000922_040 Hb_186982_040 Hb_186982_040 Hb_000377_120--Hb_186982_040 Hb_000563_200 Hb_000563_200 Hb_001410_060--Hb_000563_200 Hb_001410_060--Hb_000922_040 Hb_003880_040 Hb_003880_040 Hb_001410_060--Hb_003880_040 Hb_005306_070 Hb_005306_070 Hb_001410_060--Hb_005306_070 Hb_005269_080 Hb_005269_080 Hb_001410_060--Hb_005269_080 Hb_000136_350--Hb_186982_040 Hb_003098_020 Hb_003098_020 Hb_000136_350--Hb_003098_020 Hb_000136_260 Hb_000136_260 Hb_000136_350--Hb_000136_260 Hb_000538_120 Hb_000538_120 Hb_000136_350--Hb_000538_120 Hb_000419_020 Hb_000419_020 Hb_000136_350--Hb_000419_020 Hb_000077_180--Hb_001410_060 Hb_017491_020 Hb_017491_020 Hb_000077_180--Hb_017491_020 Hb_005460_060 Hb_005460_060 Hb_000077_180--Hb_005460_060 Hb_000110_120 Hb_000110_120 Hb_000077_180--Hb_000110_120 Hb_000009_290 Hb_000009_290 Hb_000077_180--Hb_000009_290 Hb_027684_020 Hb_027684_020 Hb_000116_040--Hb_027684_020 Hb_001269_490 Hb_001269_490 Hb_000116_040--Hb_001269_490 Hb_008772_010 Hb_008772_010 Hb_000116_040--Hb_008772_010 Hb_000116_040--Hb_001410_060 Hb_000116_040--Hb_000136_350 Hb_000922_040--Hb_005269_080 Hb_000384_120 Hb_000384_120 Hb_000922_040--Hb_000384_120 Hb_001222_080 Hb_001222_080 Hb_000922_040--Hb_001222_080 Hb_002016_080 Hb_002016_080 Hb_000922_040--Hb_002016_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_186982_040--Hb_003098_020 Hb_186982_040--Hb_000538_120 Hb_007928_030 Hb_007928_030 Hb_186982_040--Hb_007928_030 Hb_005307_050 Hb_005307_050 Hb_186982_040--Hb_005307_050 Hb_004109_340 Hb_004109_340 Hb_186982_040--Hb_004109_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82855 3.25483 4.42526 9.37111 1.87556 3.61359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.89067 16.0241 6.4617 7.65032 2.96588

CAGE analysis