Hb_005306_070

Information

Type -
Description -
Location Contig5306: 49604-53272
Sequence    

Annotation

kegg
ID pop:POPTR_0001s20390g
description hypothetical protein
nr
ID XP_012068947.1
description PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
swissprot
ID Q6Z844
description Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1
trembl
ID A0A067KXA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24746 PE=4 SV=1
Gene Ontology
ID GO:0016020
description coatomer subunit zeta-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47358: 49652-53465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_070 0.0 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
2 Hb_000215_330 0.054887997 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
3 Hb_000739_140 0.081512271 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
4 Hb_000107_300 0.0847340549 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
5 Hb_001410_060 0.0857566657 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
6 Hb_003494_050 0.088105517 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
7 Hb_005269_080 0.0883086082 - - protein with unknown function [Ricinus communis]
8 Hb_002314_010 0.0898718292 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
9 Hb_003376_190 0.0899047692 - - syntaxin, putative [Ricinus communis]
10 Hb_002303_060 0.0927700817 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000377_120 0.0985646901 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_001053_140 0.1000414811 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
13 Hb_000768_130 0.1023120818 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
14 Hb_005460_060 0.1054114919 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
15 Hb_000077_180 0.1067733418 - - -
16 Hb_002324_010 0.1079875947 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
17 Hb_009075_010 0.1088819824 - - 60S ribosomal protein L10B [Hevea brasiliensis]
18 Hb_006915_040 0.109090294 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
19 Hb_016734_070 0.115028047 - - hypothetical_protein [Oryza brachyantha]
20 Hb_001373_060 0.1156713703 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]

Gene co-expression network

sample Hb_005306_070 Hb_005306_070 Hb_000215_330 Hb_000215_330 Hb_005306_070--Hb_000215_330 Hb_000739_140 Hb_000739_140 Hb_005306_070--Hb_000739_140 Hb_000107_300 Hb_000107_300 Hb_005306_070--Hb_000107_300 Hb_001410_060 Hb_001410_060 Hb_005306_070--Hb_001410_060 Hb_003494_050 Hb_003494_050 Hb_005306_070--Hb_003494_050 Hb_005269_080 Hb_005269_080 Hb_005306_070--Hb_005269_080 Hb_000215_330--Hb_000107_300 Hb_002314_010 Hb_002314_010 Hb_000215_330--Hb_002314_010 Hb_003376_190 Hb_003376_190 Hb_000215_330--Hb_003376_190 Hb_000215_330--Hb_003494_050 Hb_002303_060 Hb_002303_060 Hb_000215_330--Hb_002303_060 Hb_009075_010 Hb_009075_010 Hb_000739_140--Hb_009075_010 Hb_005054_260 Hb_005054_260 Hb_000739_140--Hb_005054_260 Hb_000768_130 Hb_000768_130 Hb_000739_140--Hb_000768_130 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_000739_140--Hb_001410_060 Hb_000107_300--Hb_002314_010 Hb_000107_300--Hb_003376_190 Hb_000107_300--Hb_002303_060 Hb_000826_100 Hb_000826_100 Hb_000107_300--Hb_000826_100 Hb_000377_120 Hb_000377_120 Hb_001410_060--Hb_000377_120 Hb_000563_200 Hb_000563_200 Hb_001410_060--Hb_000563_200 Hb_000922_040 Hb_000922_040 Hb_001410_060--Hb_000922_040 Hb_003880_040 Hb_003880_040 Hb_001410_060--Hb_003880_040 Hb_001410_060--Hb_005269_080 Hb_000735_090 Hb_000735_090 Hb_003494_050--Hb_000735_090 Hb_007747_050 Hb_007747_050 Hb_003494_050--Hb_007747_050 Hb_006573_020 Hb_006573_020 Hb_003494_050--Hb_006573_020 Hb_001373_060 Hb_001373_060 Hb_003494_050--Hb_001373_060 Hb_003494_050--Hb_005269_080 Hb_002811_170 Hb_002811_170 Hb_003494_050--Hb_002811_170 Hb_005269_080--Hb_002303_060 Hb_005269_080--Hb_000922_040 Hb_000254_050 Hb_000254_050 Hb_005269_080--Hb_000254_050 Hb_000384_120 Hb_000384_120 Hb_005269_080--Hb_000384_120 Hb_005269_080--Hb_001053_140 Hb_000701_100 Hb_000701_100 Hb_005269_080--Hb_000701_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1738 11.9776 48.279 89.428 15.2855 31.1383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.5012 155.496 51.3125 44.8768 32.4895

CAGE analysis