Hb_009075_010

Information

Type -
Description -
Location Contig9075: 49139-51099
Sequence    

Annotation

kegg
ID pvu:PHAVU_010G043500g
description hypothetical protein
nr
ID ADR71273.1
description 60S ribosomal protein L10B [Hevea brasiliensis]
swissprot
ID Q9SPB3
description 60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1
trembl
ID I3NMN6
description 60S ribosomal protein L10B OS=Hevea brasiliensis GN=RPL10B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62077: 49086-51411 , PASA_asmbl_62078: 49102-49409
cDNA
(Sanger)
(ID:Location)		 009_N22.ab1: 49086-51155 , 017_C13.ab1: 49088-51102 , 022_M15.ab1: 49077-50811 , 031_A06.ab1: 49086-51197 , 031_B02.ab1: 49086-51179 , 034_L14.ab1: 49086-51180 , 045_G03.ab1: 49088-51220

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009075_010 0.0 - - 60S ribosomal protein L10B [Hevea brasiliensis]
2 Hb_000739_140 0.0638372924 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
3 Hb_000163_050 0.0686753122 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
4 Hb_005054_260 0.0767191261 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
5 Hb_001979_020 0.1077728314 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
6 Hb_000896_040 0.107807822 - - BnaC02g13240D [Brassica napus]
7 Hb_000377_120 0.1087446448 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_005306_070 0.1088819824 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
9 Hb_007441_260 0.1089264838 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
10 Hb_003020_150 0.1097187719 - - tropinone reductase, putative [Ricinus communis]
11 Hb_001053_140 0.1104046564 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
12 Hb_000768_130 0.1118147105 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
13 Hb_000384_120 0.1148301987 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
14 Hb_001410_060 0.1178095759 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
15 Hb_000085_350 0.1187976806 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
16 Hb_002016_080 0.1198485173 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
17 Hb_000413_280 0.1203005353 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
18 Hb_180074_010 0.1242705412 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
19 Hb_000922_040 0.1249179929 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
20 Hb_005269_080 0.1255175708 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_009075_010 Hb_009075_010 Hb_000739_140 Hb_000739_140 Hb_009075_010--Hb_000739_140 Hb_000163_050 Hb_000163_050 Hb_009075_010--Hb_000163_050 Hb_005054_260 Hb_005054_260 Hb_009075_010--Hb_005054_260 Hb_001979_020 Hb_001979_020 Hb_009075_010--Hb_001979_020 Hb_000896_040 Hb_000896_040 Hb_009075_010--Hb_000896_040 Hb_000377_120 Hb_000377_120 Hb_009075_010--Hb_000377_120 Hb_000739_140--Hb_005054_260 Hb_005306_070 Hb_005306_070 Hb_000739_140--Hb_005306_070 Hb_000768_130 Hb_000768_130 Hb_000739_140--Hb_000768_130 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_001410_060 Hb_001410_060 Hb_000739_140--Hb_001410_060 Hb_000085_350 Hb_000085_350 Hb_000163_050--Hb_000085_350 Hb_003020_150 Hb_003020_150 Hb_000163_050--Hb_003020_150 Hb_000538_120 Hb_000538_120 Hb_000163_050--Hb_000538_120 Hb_000163_050--Hb_000739_140 Hb_000413_280 Hb_000413_280 Hb_000163_050--Hb_000413_280 Hb_005054_260--Hb_001979_020 Hb_005054_260--Hb_003020_150 Hb_000384_120 Hb_000384_120 Hb_005054_260--Hb_000384_120 Hb_005054_260--Hb_000163_050 Hb_002232_060 Hb_002232_060 Hb_001979_020--Hb_002232_060 Hb_001979_020--Hb_003020_150 Hb_003880_030 Hb_003880_030 Hb_001979_020--Hb_003880_030 Hb_000072_200 Hb_000072_200 Hb_001979_020--Hb_000072_200 Hb_001979_020--Hb_000384_120 Hb_003098_020 Hb_003098_020 Hb_000896_040--Hb_003098_020 Hb_000922_040 Hb_000922_040 Hb_000896_040--Hb_000922_040 Hb_180074_010 Hb_180074_010 Hb_000896_040--Hb_180074_010 Hb_000417_260 Hb_000417_260 Hb_000896_040--Hb_000417_260 Hb_091433_020 Hb_091433_020 Hb_000896_040--Hb_091433_020 Hb_004672_010 Hb_004672_010 Hb_000896_040--Hb_004672_010 Hb_000377_120--Hb_001410_060 Hb_000136_350 Hb_000136_350 Hb_000377_120--Hb_000136_350 Hb_000077_180 Hb_000077_180 Hb_000377_120--Hb_000077_180 Hb_000116_040 Hb_000116_040 Hb_000377_120--Hb_000116_040 Hb_000377_120--Hb_000922_040 Hb_186982_040 Hb_186982_040 Hb_000377_120--Hb_186982_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.6088 49.2082 178.05 197.656 31.2348 58.9922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
204.349 457.801 204.333 197.459 91.2706

CAGE analysis