Hb_186982_040

Information

Type -
Description -
Location Contig186982: 12398-15465
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G089200g
description hypothetical protein
nr
ID XP_007154080.1
description hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
swissprot
ID O65059
description 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1
trembl
ID V7C7F6
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G089200g PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s15-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18456: 12349-15329 , PASA_asmbl_18457: 12441-12559 , PASA_asmbl_18458: 12972-13108 , PASA_asmbl_18459: 13921-14308 , PASA_asmbl_18460: 14526-14741
cDNA
(Sanger)
(ID:Location)		 031_A23.ab1: 12349-15278

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186982_040 0.0 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
2 Hb_000136_350 0.0542164984 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
3 Hb_003098_020 0.069022554 - - 40S ribosomal protein S5B [Hevea brasiliensis]
4 Hb_000538_120 0.0765743819 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
5 Hb_007928_030 0.0775454752 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
6 Hb_005307_050 0.0853901859 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
7 Hb_004109_340 0.0877383037 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
8 Hb_006573_020 0.0880558391 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
9 Hb_001353_010 0.0887797778 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
10 Hb_005914_170 0.0894992011 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
11 Hb_000136_260 0.0900144032 - - 40S ribosomal protein S5A [Hevea brasiliensis]
12 Hb_001623_060 0.0908387152 - - potassium channel beta, putative [Ricinus communis]
13 Hb_000808_190 0.0915929127 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
14 Hb_000210_120 0.0924763881 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
15 Hb_011344_120 0.0931797344 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
16 Hb_000377_120 0.0932400951 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_045003_010 0.0941141705 - - Stomatin-1, putative [Ricinus communis]
18 Hb_002042_150 0.094261622 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
19 Hb_001410_060 0.096759367 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
20 Hb_008232_010 0.0972571544 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_186982_040 Hb_186982_040 Hb_000136_350 Hb_000136_350 Hb_186982_040--Hb_000136_350 Hb_003098_020 Hb_003098_020 Hb_186982_040--Hb_003098_020 Hb_000538_120 Hb_000538_120 Hb_186982_040--Hb_000538_120 Hb_007928_030 Hb_007928_030 Hb_186982_040--Hb_007928_030 Hb_005307_050 Hb_005307_050 Hb_186982_040--Hb_005307_050 Hb_004109_340 Hb_004109_340 Hb_186982_040--Hb_004109_340 Hb_000136_350--Hb_003098_020 Hb_000136_260 Hb_000136_260 Hb_000136_350--Hb_000136_260 Hb_000136_350--Hb_000538_120 Hb_000377_120 Hb_000377_120 Hb_000136_350--Hb_000377_120 Hb_000419_020 Hb_000419_020 Hb_000136_350--Hb_000419_020 Hb_005305_150 Hb_005305_150 Hb_003098_020--Hb_005305_150 Hb_000210_120 Hb_000210_120 Hb_003098_020--Hb_000210_120 Hb_000896_040 Hb_000896_040 Hb_003098_020--Hb_000896_040 Hb_005914_170 Hb_005914_170 Hb_003098_020--Hb_005914_170 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000538_120--Hb_000136_260 Hb_000302_140 Hb_000302_140 Hb_000538_120--Hb_000302_140 Hb_000538_120--Hb_007928_030 Hb_000571_020 Hb_000571_020 Hb_000538_120--Hb_000571_020 Hb_000413_280 Hb_000413_280 Hb_000538_120--Hb_000413_280 Hb_007928_030--Hb_007894_060 Hb_011344_120 Hb_011344_120 Hb_007928_030--Hb_011344_120 Hb_001386_040 Hb_001386_040 Hb_007928_030--Hb_001386_040 Hb_000431_170 Hb_000431_170 Hb_007928_030--Hb_000431_170 Hb_007928_030--Hb_005914_170 Hb_000808_190 Hb_000808_190 Hb_005307_050--Hb_000808_190 Hb_005307_050--Hb_007928_030 Hb_000212_290 Hb_000212_290 Hb_005307_050--Hb_000212_290 Hb_008695_050 Hb_008695_050 Hb_005307_050--Hb_008695_050 Hb_001242_140 Hb_001242_140 Hb_005307_050--Hb_001242_140 Hb_002042_150 Hb_002042_150 Hb_004109_340--Hb_002042_150 Hb_004109_340--Hb_000136_260 Hb_011628_060 Hb_011628_060 Hb_004109_340--Hb_011628_060 Hb_023001_040 Hb_023001_040 Hb_004109_340--Hb_023001_040 Hb_161574_020 Hb_161574_020 Hb_004109_340--Hb_161574_020 Hb_001189_070 Hb_001189_070 Hb_004109_340--Hb_001189_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5805 19.5729 38.9425 71.298 20.8073 38.2554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.5617 103.802 44.3975 71.7396 38.181

CAGE analysis