Hb_000419_020

Information

Type -
Description -
Location Contig419: 38579-48972
Sequence    

Annotation

kegg
ID rcu:RCOM_0228150
description p-aminobenzoate synthase, putative (EC:4.1.3.27)
nr
ID XP_012086337.1
description PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q6TAS3
description Aminodeoxychorismate synthase, chloroplastic OS=Solanum lycopersicum GN=ADCS PE=2 SV=1
trembl
ID B9SUA1
description p-aminobenzoate synthase, putative OS=Ricinus communis GN=RCOM_0228150 PE=4 SV=1
Gene Ontology
ID GO:0016833
description aminodeoxychorismate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41384: 38823-40140 , PASA_asmbl_41385: 40438-41592 , PASA_asmbl_41386: 41778-44164 , PASA_asmbl_41387: 42329-44164 , PASA_asmbl_41389: 47312-48341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000419_020 0.0 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_007747_050 0.0566025293 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
3 Hb_000136_260 0.0710614358 - - 40S ribosomal protein S5A [Hevea brasiliensis]
4 Hb_000155_160 0.0712109316 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
5 Hb_002811_170 0.0767795792 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
6 Hb_000946_090 0.0773813528 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
7 Hb_004586_420 0.0782404887 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
8 Hb_001931_010 0.0791808621 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
9 Hb_000136_350 0.0811170299 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
10 Hb_000538_120 0.0844317666 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
11 Hb_007894_060 0.0862092318 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
12 Hb_000847_060 0.0863083885 - - hypothetical protein [Jatropha curcas]
13 Hb_003669_020 0.0881015953 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
14 Hb_000739_300 0.0881523497 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
15 Hb_004109_340 0.0884041303 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
16 Hb_044653_040 0.0895213722 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
17 Hb_002239_050 0.0901773712 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
18 Hb_007928_030 0.0915991342 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
19 Hb_001863_430 0.0926531133 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
20 Hb_000505_130 0.0926988727 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000419_020 Hb_000419_020 Hb_007747_050 Hb_007747_050 Hb_000419_020--Hb_007747_050 Hb_000136_260 Hb_000136_260 Hb_000419_020--Hb_000136_260 Hb_000155_160 Hb_000155_160 Hb_000419_020--Hb_000155_160 Hb_002811_170 Hb_002811_170 Hb_000419_020--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_000419_020--Hb_000946_090 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420 Hb_007747_050--Hb_002811_170 Hb_000735_090 Hb_000735_090 Hb_007747_050--Hb_000735_090 Hb_003494_050 Hb_003494_050 Hb_007747_050--Hb_003494_050 Hb_000085_350 Hb_000085_350 Hb_007747_050--Hb_000085_350 Hb_001863_430 Hb_001863_430 Hb_007747_050--Hb_001863_430 Hb_000538_120 Hb_000538_120 Hb_000136_260--Hb_000538_120 Hb_002078_140 Hb_002078_140 Hb_000136_260--Hb_002078_140 Hb_000099_150 Hb_000099_150 Hb_000136_260--Hb_000099_150 Hb_000136_350 Hb_000136_350 Hb_000136_260--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_000136_260--Hb_004109_340 Hb_000155_160--Hb_000085_350 Hb_000155_160--Hb_007747_050 Hb_000847_060 Hb_000847_060 Hb_000155_160--Hb_000847_060 Hb_000155_160--Hb_001863_430 Hb_000327_230 Hb_000327_230 Hb_000155_160--Hb_000327_230 Hb_000836_470 Hb_000836_470 Hb_002811_170--Hb_000836_470 Hb_001931_010 Hb_001931_010 Hb_002811_170--Hb_001931_010 Hb_002811_170--Hb_001863_430 Hb_001728_030 Hb_001728_030 Hb_002811_170--Hb_001728_030 Hb_001016_150 Hb_001016_150 Hb_002811_170--Hb_001016_150 Hb_001804_080 Hb_001804_080 Hb_000946_090--Hb_001804_080 Hb_000946_090--Hb_001931_010 Hb_006326_040 Hb_006326_040 Hb_000946_090--Hb_006326_040 Hb_032202_100 Hb_032202_100 Hb_000946_090--Hb_032202_100 Hb_002968_040 Hb_002968_040 Hb_000946_090--Hb_002968_040 Hb_006573_190 Hb_006573_190 Hb_004586_420--Hb_006573_190 Hb_000003_230 Hb_000003_230 Hb_004586_420--Hb_000003_230 Hb_007676_080 Hb_007676_080 Hb_004586_420--Hb_007676_080 Hb_008494_100 Hb_008494_100 Hb_004586_420--Hb_008494_100 Hb_001489_090 Hb_001489_090 Hb_004586_420--Hb_001489_090 Hb_000390_300 Hb_000390_300 Hb_004586_420--Hb_000390_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.16674 3.7978 6.31821 7.62145 2.87225 4.00569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.0051 15.1362 4.74907 7.04868 6.38739

CAGE analysis