Hb_032202_100

Information

Type desease resistance
Description Gene Name: ArsA_ATPase
Location Contig32202: 71165-75238
Sequence    

Annotation

kegg
ID rcu:RCOM_1613490
description arsenical pump-driving atpase, putative (EC:3.6.3.16)
nr
ID XP_002511778.1
description arsenical pump-driving atpase, putative [Ricinus communis]
swissprot
ID Q16MG9
description ATPase ASNA1 homolog OS=Aedes aegypti GN=AAEL011136 PE=3 SV=1
trembl
ID B9RDI9
description ATPase ASNA1 homolog OS=Ricinus communis GN=RCOM_1613490 PE=3 SV=1
Gene Ontology
ID GO:0005783
description atpase asna1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34070: 71158-75132 , PASA_asmbl_34071: 71161-75173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_100 0.0 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
2 Hb_000130_270 0.0722914061 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
3 Hb_000926_200 0.0743432201 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
4 Hb_155215_020 0.075398351 - - PREDICTED: RNA-binding protein pno1-like [Populus euphratica]
5 Hb_000035_160 0.0778797081 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
6 Hb_000946_090 0.0787726902 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
7 Hb_161574_020 0.0798102575 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
8 Hb_000116_490 0.0798692767 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
9 Hb_000300_260 0.0798856429 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
10 Hb_001804_080 0.0819418371 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
11 Hb_000215_090 0.084285931 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
12 Hb_000086_170 0.0847920568 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
13 Hb_000599_260 0.0848755744 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
14 Hb_000270_310 0.0862691172 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
15 Hb_002307_180 0.0888215353 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
16 Hb_005288_130 0.0901891929 - - protein with unknown function [Ricinus communis]
17 Hb_002572_020 0.0904612662 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
18 Hb_005245_120 0.0909623828 - - XPA-binding protein, putative [Ricinus communis]
19 Hb_000152_600 0.0914827067 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
20 Hb_004807_020 0.0919705117 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]

Gene co-expression network

sample Hb_032202_100 Hb_032202_100 Hb_000130_270 Hb_000130_270 Hb_032202_100--Hb_000130_270 Hb_000926_200 Hb_000926_200 Hb_032202_100--Hb_000926_200 Hb_155215_020 Hb_155215_020 Hb_032202_100--Hb_155215_020 Hb_000035_160 Hb_000035_160 Hb_032202_100--Hb_000035_160 Hb_000946_090 Hb_000946_090 Hb_032202_100--Hb_000946_090 Hb_161574_020 Hb_161574_020 Hb_032202_100--Hb_161574_020 Hb_000130_270--Hb_161574_020 Hb_163175_010 Hb_163175_010 Hb_000130_270--Hb_163175_010 Hb_006846_130 Hb_006846_130 Hb_000130_270--Hb_006846_130 Hb_000076_220 Hb_000076_220 Hb_000130_270--Hb_000076_220 Hb_000086_170 Hb_000086_170 Hb_000130_270--Hb_000086_170 Hb_000926_200--Hb_000035_160 Hb_040819_010 Hb_040819_010 Hb_000926_200--Hb_040819_010 Hb_004984_030 Hb_004984_030 Hb_000926_200--Hb_004984_030 Hb_053709_050 Hb_053709_050 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_002572_020 Hb_002572_020 Hb_155215_020--Hb_002572_020 Hb_155215_020--Hb_000086_170 Hb_000270_310 Hb_000270_310 Hb_155215_020--Hb_000270_310 Hb_004607_090 Hb_004607_090 Hb_155215_020--Hb_004607_090 Hb_000840_200 Hb_000840_200 Hb_155215_020--Hb_000840_200 Hb_003207_180 Hb_003207_180 Hb_000035_160--Hb_003207_180 Hb_157023_020 Hb_157023_020 Hb_000035_160--Hb_157023_020 Hb_000116_490 Hb_000116_490 Hb_000035_160--Hb_000116_490 Hb_000603_160 Hb_000603_160 Hb_000035_160--Hb_000603_160 Hb_001804_080 Hb_001804_080 Hb_000946_090--Hb_001804_080 Hb_001931_010 Hb_001931_010 Hb_000946_090--Hb_001931_010 Hb_000419_020 Hb_000419_020 Hb_000946_090--Hb_000419_020 Hb_006326_040 Hb_006326_040 Hb_000946_090--Hb_006326_040 Hb_002968_040 Hb_002968_040 Hb_000946_090--Hb_002968_040 Hb_007878_010 Hb_007878_010 Hb_161574_020--Hb_007878_010 Hb_161574_020--Hb_000270_310 Hb_002171_060 Hb_002171_060 Hb_161574_020--Hb_002171_060 Hb_002641_060 Hb_002641_060 Hb_161574_020--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_161574_020--Hb_013575_010 Hb_001278_100 Hb_001278_100 Hb_161574_020--Hb_001278_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.68242 4.92448 12.9972 11.2313 4.67305 5.11216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.32264 12.2155 4.28162 5.79631 6.27027

CAGE analysis