Hb_000926_200

Information

Type transcription factor
Description TF Family: Rcd1-like
Location Contig926: 230277-235841
Sequence    

Annotation

kegg
ID tcc:TCM_040506
description Cell differentiation, Rcd1-like protein isoform 1
nr
ID XP_012070881.1
description PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q6P819
description Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis GN=rqcd1 PE=2 SV=1
trembl
ID F6HER0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00930 PE=4 SV=1
Gene Ontology
ID GO:0005488
description cell differentiation protein rcd1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62680: 230362-235823 , PASA_asmbl_62681: 230349-235830
cDNA
(Sanger)
(ID:Location)		 026_K03.ab1: 230362-234097

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_200 0.0 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
2 Hb_000035_160 0.0696206548 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
3 Hb_040819_010 0.0697516042 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_032202_100 0.0743432201 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
5 Hb_004984_030 0.0793793733 - - protein with unknown function [Ricinus communis]
6 Hb_053709_050 0.0819970293 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_002316_140 0.0885732113 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
8 Hb_003498_100 0.0905216889 - - component of oligomeric golgi complex, putative [Ricinus communis]
9 Hb_005245_120 0.0915620992 - - XPA-binding protein, putative [Ricinus communis]
10 Hb_000832_190 0.0924878934 - - Rab3 [Hevea brasiliensis]
11 Hb_004965_110 0.0930474659 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
12 Hb_001191_080 0.0940962415 - - protein with unknown function [Ricinus communis]
13 Hb_001178_010 0.094471452 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
14 Hb_002572_020 0.0949667348 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
15 Hb_002028_090 0.0952165176 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
16 Hb_000603_160 0.0958148564 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
17 Hb_002693_030 0.0969732904 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
18 Hb_000152_600 0.0972140333 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
19 Hb_081599_010 0.0976237813 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004218_010 0.098340218 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_200 Hb_000926_200 Hb_000035_160 Hb_000035_160 Hb_000926_200--Hb_000035_160 Hb_040819_010 Hb_040819_010 Hb_000926_200--Hb_040819_010 Hb_032202_100 Hb_032202_100 Hb_000926_200--Hb_032202_100 Hb_004984_030 Hb_004984_030 Hb_000926_200--Hb_004984_030 Hb_053709_050 Hb_053709_050 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_000035_160--Hb_032202_100 Hb_003207_180 Hb_003207_180 Hb_000035_160--Hb_003207_180 Hb_157023_020 Hb_157023_020 Hb_000035_160--Hb_157023_020 Hb_000116_490 Hb_000116_490 Hb_000035_160--Hb_000116_490 Hb_000603_160 Hb_000603_160 Hb_000035_160--Hb_000603_160 Hb_040819_010--Hb_004984_030 Hb_002028_090 Hb_002028_090 Hb_040819_010--Hb_002028_090 Hb_040819_010--Hb_000035_160 Hb_040819_010--Hb_032202_100 Hb_040819_010--Hb_000116_490 Hb_000130_270 Hb_000130_270 Hb_032202_100--Hb_000130_270 Hb_155215_020 Hb_155215_020 Hb_032202_100--Hb_155215_020 Hb_000946_090 Hb_000946_090 Hb_032202_100--Hb_000946_090 Hb_161574_020 Hb_161574_020 Hb_032202_100--Hb_161574_020 Hb_000832_190 Hb_000832_190 Hb_004984_030--Hb_000832_190 Hb_004984_030--Hb_002028_090 Hb_004984_030--Hb_000946_090 Hb_005460_060 Hb_005460_060 Hb_004984_030--Hb_005460_060 Hb_001633_090 Hb_001633_090 Hb_053709_050--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_053709_050--Hb_007850_030 Hb_006637_030 Hb_006637_030 Hb_053709_050--Hb_006637_030 Hb_053709_050--Hb_000603_160 Hb_002693_030 Hb_002693_030 Hb_053709_050--Hb_002693_030 Hb_189216_010 Hb_189216_010 Hb_053709_050--Hb_189216_010 Hb_002572_020 Hb_002572_020 Hb_002316_140--Hb_002572_020 Hb_010098_020 Hb_010098_020 Hb_002316_140--Hb_010098_020 Hb_014497_100 Hb_014497_100 Hb_002316_140--Hb_014497_100 Hb_000537_100 Hb_000537_100 Hb_002316_140--Hb_000537_100 Hb_001178_010 Hb_001178_010 Hb_002316_140--Hb_001178_010 Hb_073973_090 Hb_073973_090 Hb_002316_140--Hb_073973_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93783 13.6685 31.7104 25.9168 7.65583 8.50894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7152 23.4671 11.9118 11.3113 15.0947

CAGE analysis