Hb_006637_030

Information

Type -
Description -
Location Contig6637: 17621-21842
Sequence    

Annotation

kegg
ID cic:CICLE_v10011936mg
description hypothetical protein
nr
ID KDO50670.1
description hypothetical protein CISIN_1g017413mg [Citrus sinensis]
swissprot
ID Q945K7
description Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial OS=Arabidopsis thaliana GN=IDH5 PE=2 SV=1
trembl
ID A0A067E9Z4
description Isocitrate dehydrogenase [NAD] subunit, mitochondrial OS=Citrus sinensis GN=CISIN_1g017413mg PE=3 SV=1
Gene Ontology
ID GO:0005739
description isocitrate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53122: 17624-21818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006637_030 0.0 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
2 Hb_000723_230 0.0600409311 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
3 Hb_002693_030 0.0660277639 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
4 Hb_053709_050 0.0743339508 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_026198_010 0.083817667 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
6 Hb_189216_010 0.0864929617 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
7 Hb_005653_070 0.0874334349 - - K+ transport growth defect-like protein [Hevea brasiliensis]
8 Hb_001728_040 0.089432167 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
9 Hb_000684_040 0.0908209073 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
10 Hb_002232_430 0.0925289625 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
11 Hb_000330_090 0.0938170137 - - ornithine carbamoyltransferase, putative [Ricinus communis]
12 Hb_172426_030 0.0940523757 - - acetylglucosaminyltransferase, putative [Ricinus communis]
13 Hb_001269_130 0.0952430537 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
14 Hb_000076_210 0.0963686034 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
15 Hb_002471_090 0.0963891754 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
16 Hb_015057_020 0.0969214344 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
17 Hb_007850_030 0.0978972665 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
18 Hb_001147_050 0.0992515167 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
19 Hb_002477_290 0.0994800171 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
20 Hb_004005_020 0.1011257429 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006637_030 Hb_006637_030 Hb_000723_230 Hb_000723_230 Hb_006637_030--Hb_000723_230 Hb_002693_030 Hb_002693_030 Hb_006637_030--Hb_002693_030 Hb_053709_050 Hb_053709_050 Hb_006637_030--Hb_053709_050 Hb_026198_010 Hb_026198_010 Hb_006637_030--Hb_026198_010 Hb_189216_010 Hb_189216_010 Hb_006637_030--Hb_189216_010 Hb_005653_070 Hb_005653_070 Hb_006637_030--Hb_005653_070 Hb_000723_230--Hb_005653_070 Hb_001728_040 Hb_001728_040 Hb_000723_230--Hb_001728_040 Hb_000465_300 Hb_000465_300 Hb_000723_230--Hb_000465_300 Hb_000684_040 Hb_000684_040 Hb_000723_230--Hb_000684_040 Hb_006060_020 Hb_006060_020 Hb_000723_230--Hb_006060_020 Hb_007850_030 Hb_007850_030 Hb_002693_030--Hb_007850_030 Hb_000330_090 Hb_000330_090 Hb_002693_030--Hb_000330_090 Hb_002693_030--Hb_053709_050 Hb_002534_130 Hb_002534_130 Hb_002693_030--Hb_002534_130 Hb_002693_030--Hb_026198_010 Hb_001633_090 Hb_001633_090 Hb_053709_050--Hb_001633_090 Hb_053709_050--Hb_007850_030 Hb_000603_160 Hb_000603_160 Hb_053709_050--Hb_000603_160 Hb_053709_050--Hb_189216_010 Hb_000120_810 Hb_000120_810 Hb_026198_010--Hb_000120_810 Hb_000926_260 Hb_000926_260 Hb_026198_010--Hb_000926_260 Hb_003687_120 Hb_003687_120 Hb_026198_010--Hb_003687_120 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090 Hb_005563_070 Hb_005563_070 Hb_189216_010--Hb_005563_070 Hb_189216_010--Hb_000603_160 Hb_002471_090 Hb_002471_090 Hb_189216_010--Hb_002471_090 Hb_000778_010 Hb_000778_010 Hb_189216_010--Hb_000778_010 Hb_008748_030 Hb_008748_030 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030 Hb_000964_030 Hb_000964_030 Hb_005653_070--Hb_000964_030 Hb_038574_010 Hb_038574_010 Hb_005653_070--Hb_038574_010 Hb_005653_070--Hb_189216_010 Hb_005653_070--Hb_001728_040 Hb_007218_120 Hb_007218_120 Hb_005653_070--Hb_007218_120 Hb_000069_640 Hb_000069_640 Hb_005653_070--Hb_000069_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4691 28.8482 45.11 40.5466 9.53207 9.73979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.8575 35.2735 23.6179 36.7301 26.9182

CAGE analysis