Hb_053709_050

Information

Type -
Description -
Location Contig53709: 59947-68387
Sequence    

Annotation

kegg
ID rcu:RCOM_0503970
description mutt/nudix hydrolase, putative
nr
ID XP_012087778.1
description PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID P93740
description Nudix hydrolase 23, chloroplastic OS=Arabidopsis thaliana GN=NUDT23 PE=1 SV=2
trembl
ID A0A067JXA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25546 PE=3 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47607: 60577-68357
cDNA
(Sanger)
(ID:Location)		 009_O06.ab1: 60577-66341 , 017_N04.ab1: 60577-66273 , 038_P05.ab1: 60577-66390

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053709_050 0.0 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_001633_090 0.0695282191 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
3 Hb_007850_030 0.0704554567 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
4 Hb_006637_030 0.0743339508 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
5 Hb_000603_160 0.0756350399 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
6 Hb_002693_030 0.0799097924 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
7 Hb_189216_010 0.0800178849 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
8 Hb_000926_200 0.0819970293 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
9 Hb_004994_210 0.0832475071 - - phosphomannomutase family protein [Populus trichocarpa]
10 Hb_000365_270 0.08519256 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
11 Hb_005653_070 0.0852896748 - - K+ transport growth defect-like protein [Hevea brasiliensis]
12 Hb_005563_070 0.0857014812 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]
13 Hb_000069_640 0.0872004728 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
14 Hb_000017_260 0.0872785313 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
15 Hb_000120_810 0.0893361257 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
16 Hb_000964_030 0.0895658325 - - ADP/ATP carrier 2 [Theobroma cacao]
17 Hb_000723_230 0.0944275931 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
18 Hb_000227_390 0.0957509937 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
19 Hb_000080_130 0.0964030794 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
20 Hb_012262_030 0.0978646345 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_053709_050 Hb_053709_050 Hb_001633_090 Hb_001633_090 Hb_053709_050--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_053709_050--Hb_007850_030 Hb_006637_030 Hb_006637_030 Hb_053709_050--Hb_006637_030 Hb_000603_160 Hb_000603_160 Hb_053709_050--Hb_000603_160 Hb_002693_030 Hb_002693_030 Hb_053709_050--Hb_002693_030 Hb_189216_010 Hb_189216_010 Hb_053709_050--Hb_189216_010 Hb_004994_210 Hb_004994_210 Hb_001633_090--Hb_004994_210 Hb_001633_090--Hb_007850_030 Hb_007741_130 Hb_007741_130 Hb_001633_090--Hb_007741_130 Hb_001633_090--Hb_002693_030 Hb_000742_010 Hb_000742_010 Hb_001633_090--Hb_000742_010 Hb_007850_030--Hb_002693_030 Hb_007850_030--Hb_004994_210 Hb_001482_050 Hb_001482_050 Hb_007850_030--Hb_001482_050 Hb_000227_390 Hb_000227_390 Hb_007850_030--Hb_000227_390 Hb_000723_230 Hb_000723_230 Hb_006637_030--Hb_000723_230 Hb_006637_030--Hb_002693_030 Hb_026198_010 Hb_026198_010 Hb_006637_030--Hb_026198_010 Hb_006637_030--Hb_189216_010 Hb_005653_070 Hb_005653_070 Hb_006637_030--Hb_005653_070 Hb_005563_070 Hb_005563_070 Hb_000603_160--Hb_005563_070 Hb_002572_020 Hb_002572_020 Hb_000603_160--Hb_002572_020 Hb_000603_160--Hb_189216_010 Hb_000365_270 Hb_000365_270 Hb_000603_160--Hb_000365_270 Hb_001141_420 Hb_001141_420 Hb_000603_160--Hb_001141_420 Hb_004607_090 Hb_004607_090 Hb_000603_160--Hb_004607_090 Hb_000330_090 Hb_000330_090 Hb_002693_030--Hb_000330_090 Hb_002534_130 Hb_002534_130 Hb_002693_030--Hb_002534_130 Hb_002693_030--Hb_026198_010 Hb_189216_010--Hb_005563_070 Hb_002471_090 Hb_002471_090 Hb_189216_010--Hb_002471_090 Hb_000778_010 Hb_000778_010 Hb_189216_010--Hb_000778_010 Hb_008748_030 Hb_008748_030 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63879 8.05393 16.5262 15.4753 2.89629 4.62455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.95522 10.0511 8.3619 8.79799 8.14222

CAGE analysis