Hb_001482_050

Information

Type -
Description -
Location Contig1482: 30234-33706
Sequence    

Annotation

kegg
ID rcu:RCOM_0603940
description COR413-PM2, putative
nr
ID XP_002522385.1
description COR413-PM2, putative [Ricinus communis]
swissprot
ID Q9SVL6
description Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana GN=COR413PM2 PE=2 SV=1
trembl
ID B9S8R6
description COR413-PM2, putative OS=Ricinus communis GN=RCOM_0603940 PE=4 SV=1
Gene Ontology
ID GO:0005774
description cold-regulated 413 plasma membrane protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001482_050 0.0 - - COR413-PM2, putative [Ricinus communis]
2 Hb_004079_130 0.0900378466 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
3 Hb_007850_030 0.0903388595 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
4 Hb_000260_470 0.0962113577 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
5 Hb_133004_010 0.0981506834 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
6 Hb_000227_390 0.0992557947 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
7 Hb_001660_100 0.1028252447 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
8 Hb_001633_090 0.1071859377 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
9 Hb_000963_040 0.1096487679 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
10 Hb_006570_160 0.1101406328 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
11 Hb_052805_010 0.1107130749 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
12 Hb_001357_310 0.11335304 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
13 Hb_010381_010 0.1137240432 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_053709_050 0.1140114906 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_000622_200 0.1143605408 - - aldose 1-epimerase, putative [Ricinus communis]
16 Hb_006573_040 0.1150044322 - - DNA binding protein, putative [Ricinus communis]
17 Hb_011282_060 0.1154106679 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
18 Hb_009193_090 0.1164814082 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
19 Hb_012262_030 0.1169469321 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
20 Hb_001825_040 0.1171655255 - - myosin XI, putative [Ricinus communis]

Gene co-expression network

sample Hb_001482_050 Hb_001482_050 Hb_004079_130 Hb_004079_130 Hb_001482_050--Hb_004079_130 Hb_007850_030 Hb_007850_030 Hb_001482_050--Hb_007850_030 Hb_000260_470 Hb_000260_470 Hb_001482_050--Hb_000260_470 Hb_133004_010 Hb_133004_010 Hb_001482_050--Hb_133004_010 Hb_000227_390 Hb_000227_390 Hb_001482_050--Hb_000227_390 Hb_001660_100 Hb_001660_100 Hb_001482_050--Hb_001660_100 Hb_000120_810 Hb_000120_810 Hb_004079_130--Hb_000120_810 Hb_004079_130--Hb_000227_390 Hb_026198_010 Hb_026198_010 Hb_004079_130--Hb_026198_010 Hb_000704_030 Hb_000704_030 Hb_004079_130--Hb_000704_030 Hb_012092_050 Hb_012092_050 Hb_004079_130--Hb_012092_050 Hb_002693_030 Hb_002693_030 Hb_007850_030--Hb_002693_030 Hb_053709_050 Hb_053709_050 Hb_007850_030--Hb_053709_050 Hb_001633_090 Hb_001633_090 Hb_007850_030--Hb_001633_090 Hb_004994_210 Hb_004994_210 Hb_007850_030--Hb_004994_210 Hb_007850_030--Hb_000227_390 Hb_005271_040 Hb_005271_040 Hb_000260_470--Hb_005271_040 Hb_000260_470--Hb_001660_100 Hb_006570_160 Hb_006570_160 Hb_000260_470--Hb_006570_160 Hb_159809_070 Hb_159809_070 Hb_000260_470--Hb_159809_070 Hb_079526_040 Hb_079526_040 Hb_000260_470--Hb_079526_040 Hb_000392_420 Hb_000392_420 Hb_000260_470--Hb_000392_420 Hb_000830_020 Hb_000830_020 Hb_133004_010--Hb_000830_020 Hb_133004_010--Hb_001660_100 Hb_133004_010--Hb_006570_160 Hb_001227_120 Hb_001227_120 Hb_133004_010--Hb_001227_120 Hb_005754_040 Hb_005754_040 Hb_133004_010--Hb_005754_040 Hb_001279_190 Hb_001279_190 Hb_000227_390--Hb_001279_190 Hb_007483_070 Hb_007483_070 Hb_000227_390--Hb_007483_070 Hb_000227_390--Hb_000120_810 Hb_003540_050 Hb_003540_050 Hb_000227_390--Hb_003540_050 Hb_000703_190 Hb_000703_190 Hb_000227_390--Hb_000703_190 Hb_001660_100--Hb_005271_040 Hb_000853_150 Hb_000853_150 Hb_001660_100--Hb_000853_150 Hb_001369_300 Hb_001369_300 Hb_001660_100--Hb_001369_300 Hb_000663_060 Hb_000663_060 Hb_001660_100--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_001660_100--Hb_001828_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.25186 10.9698 22.0274 23.562 7.38854 7.58928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3093 8.98448 10.1422 16.6279 6.19512

CAGE analysis