Hb_001660_100

Information

Type -
Description -
Location Contig1660: 87729-94949
Sequence    

Annotation

kegg
ID rcu:RCOM_1330220
description phosphoglycerate dehydrogenase, putative (EC:1.1.1.95)
nr
ID XP_012079725.1
description PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
swissprot
ID A1RYE4
description Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1
trembl
ID A0A067K5X5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14851 PE=3 SV=1
Gene Ontology
ID GO:0016616
description glyoxylate reductase hydroxypyruvate reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15304: 87796-94807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001660_100 0.0 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
2 Hb_000260_470 0.0655617343 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
3 Hb_005271_040 0.0750028226 - - PREDICTED: serine racemase [Jatropha curcas]
4 Hb_000853_150 0.0779172394 - - Fumarase 1 isoform 2 [Theobroma cacao]
5 Hb_001369_300 0.0782072934 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
6 Hb_000663_060 0.083261176 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
7 Hb_001828_180 0.084479656 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
8 Hb_000167_010 0.0862652714 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000402_150 0.0868811546 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
10 Hb_007894_150 0.087613818 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
11 Hb_002007_080 0.0882765404 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
12 Hb_000329_800 0.0885277407 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000778_010 0.0889986974 - - hypothetical protein [Bacillus subtilis]
14 Hb_003058_120 0.0891869609 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
15 Hb_163175_010 0.090009391 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
16 Hb_006570_160 0.0926179225 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
17 Hb_000392_420 0.0928324644 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
18 Hb_159809_070 0.0939174456 - - phospholipase A-2-activating protein, putative [Ricinus communis]
19 Hb_003430_050 0.0947080694 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
20 Hb_011282_050 0.0956412033 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001660_100 Hb_001660_100 Hb_000260_470 Hb_000260_470 Hb_001660_100--Hb_000260_470 Hb_005271_040 Hb_005271_040 Hb_001660_100--Hb_005271_040 Hb_000853_150 Hb_000853_150 Hb_001660_100--Hb_000853_150 Hb_001369_300 Hb_001369_300 Hb_001660_100--Hb_001369_300 Hb_000663_060 Hb_000663_060 Hb_001660_100--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_001660_100--Hb_001828_180 Hb_000260_470--Hb_005271_040 Hb_006570_160 Hb_006570_160 Hb_000260_470--Hb_006570_160 Hb_159809_070 Hb_159809_070 Hb_000260_470--Hb_159809_070 Hb_079526_040 Hb_079526_040 Hb_000260_470--Hb_079526_040 Hb_000392_420 Hb_000392_420 Hb_000260_470--Hb_000392_420 Hb_000875_080 Hb_000875_080 Hb_005271_040--Hb_000875_080 Hb_163175_010 Hb_163175_010 Hb_005271_040--Hb_163175_010 Hb_002681_100 Hb_002681_100 Hb_005271_040--Hb_002681_100 Hb_005271_040--Hb_000663_060 Hb_002272_050 Hb_002272_050 Hb_005271_040--Hb_002272_050 Hb_003058_120 Hb_003058_120 Hb_000853_150--Hb_003058_120 Hb_001218_030 Hb_001218_030 Hb_000853_150--Hb_001218_030 Hb_005588_060 Hb_005588_060 Hb_000853_150--Hb_005588_060 Hb_001828_150 Hb_001828_150 Hb_000853_150--Hb_001828_150 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_000076_220 Hb_000076_220 Hb_000853_150--Hb_000076_220 Hb_001357_310 Hb_001357_310 Hb_001369_300--Hb_001357_310 Hb_000510_340 Hb_000510_340 Hb_001369_300--Hb_000510_340 Hb_000402_150 Hb_000402_150 Hb_001369_300--Hb_000402_150 Hb_001369_300--Hb_005271_040 Hb_001369_300--Hb_000875_080 Hb_000663_060--Hb_001828_180 Hb_000778_010 Hb_000778_010 Hb_000663_060--Hb_000778_010 Hb_001269_130 Hb_001269_130 Hb_000663_060--Hb_001269_130 Hb_000363_190 Hb_000363_190 Hb_000663_060--Hb_000363_190 Hb_023001_040 Hb_023001_040 Hb_000663_060--Hb_023001_040 Hb_000663_060--Hb_163175_010 Hb_001828_180--Hb_000363_190 Hb_001828_180--Hb_000778_010 Hb_001828_180--Hb_023001_040 Hb_002301_100 Hb_002301_100 Hb_001828_180--Hb_002301_100 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.59808 9.52549 21.0944 16.1271 8.65618 10.7504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4393 11.8387 12.0449 21.6319 9.90746

CAGE analysis