Hb_000510_340

Information

Type transcription factor
Description TF Family: bZIP
Location Contig510: 317421-321906
Sequence    

Annotation

kegg
ID rcu:RCOM_0991570
description DNA binding protein, putative
nr
ID XP_012092128.1
description PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
swissprot
ID Q99090
description Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2
trembl
ID A0A067JC43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21848 PE=4 SV=1
Gene Ontology
ID GO:0003700
description light-inducible protein cprf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46318: 317435-320630 , PASA_asmbl_46320: 321002-321823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_340 0.0 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
2 Hb_011224_160 0.0596249359 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
3 Hb_002439_010 0.0620986878 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
4 Hb_001828_180 0.0702209138 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
5 Hb_003528_050 0.0753300555 - - protein transporter, putative [Ricinus communis]
6 Hb_011671_270 0.0790714457 - - phosphofructokinase [Hevea brasiliensis]
7 Hb_000979_220 0.0807901997 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
8 Hb_007894_150 0.0809991566 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
9 Hb_001301_150 0.0813622058 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
10 Hb_000167_010 0.0815447304 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000663_060 0.0825763397 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
12 Hb_050847_050 0.082798464 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
13 Hb_006588_060 0.0828796339 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
14 Hb_006189_020 0.0839059268 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
15 Hb_164390_010 0.0840353302 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
16 Hb_000363_190 0.0841916074 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
17 Hb_002400_340 0.0849945096 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
18 Hb_003777_290 0.0862221539 - - polypyrimidine tract binding protein, putative [Ricinus communis]
19 Hb_002007_080 0.0870924907 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
20 Hb_183510_020 0.0871820203 - - coated vesicle membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000510_340 Hb_000510_340 Hb_011224_160 Hb_011224_160 Hb_000510_340--Hb_011224_160 Hb_002439_010 Hb_002439_010 Hb_000510_340--Hb_002439_010 Hb_001828_180 Hb_001828_180 Hb_000510_340--Hb_001828_180 Hb_003528_050 Hb_003528_050 Hb_000510_340--Hb_003528_050 Hb_011671_270 Hb_011671_270 Hb_000510_340--Hb_011671_270 Hb_000979_220 Hb_000979_220 Hb_000510_340--Hb_000979_220 Hb_000347_450 Hb_000347_450 Hb_011224_160--Hb_000347_450 Hb_000088_270 Hb_000088_270 Hb_011224_160--Hb_000088_270 Hb_003777_290 Hb_003777_290 Hb_011224_160--Hb_003777_290 Hb_000363_190 Hb_000363_190 Hb_011224_160--Hb_000363_190 Hb_021576_010 Hb_021576_010 Hb_011224_160--Hb_021576_010 Hb_000167_010 Hb_000167_010 Hb_002439_010--Hb_000167_010 Hb_002439_010--Hb_001828_180 Hb_004319_080 Hb_004319_080 Hb_002439_010--Hb_004319_080 Hb_003883_060 Hb_003883_060 Hb_002439_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_002439_010--Hb_001301_150 Hb_000663_060 Hb_000663_060 Hb_001828_180--Hb_000663_060 Hb_001828_180--Hb_000363_190 Hb_000778_010 Hb_000778_010 Hb_001828_180--Hb_000778_010 Hb_023001_040 Hb_023001_040 Hb_001828_180--Hb_023001_040 Hb_002301_100 Hb_002301_100 Hb_001828_180--Hb_002301_100 Hb_003528_050--Hb_000979_220 Hb_027506_010 Hb_027506_010 Hb_003528_050--Hb_027506_010 Hb_011883_020 Hb_011883_020 Hb_003528_050--Hb_011883_020 Hb_000173_190 Hb_000173_190 Hb_003528_050--Hb_000173_190 Hb_001300_280 Hb_001300_280 Hb_003528_050--Hb_001300_280 Hb_000565_040 Hb_000565_040 Hb_011671_270--Hb_000565_040 Hb_028960_030 Hb_028960_030 Hb_011671_270--Hb_028960_030 Hb_011671_270--Hb_003528_050 Hb_000352_310 Hb_000352_310 Hb_011671_270--Hb_000352_310 Hb_011671_270--Hb_011224_160 Hb_000979_220--Hb_021576_010 Hb_000979_220--Hb_003777_290 Hb_000979_220--Hb_027506_010 Hb_004096_110 Hb_004096_110 Hb_000979_220--Hb_004096_110 Hb_002046_010 Hb_002046_010 Hb_000979_220--Hb_002046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.60908 8.98627 13.5802 8.95789 6.31411 5.80424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.73177 10.6415 6.97969 16.9373 11.4961

CAGE analysis