Hb_011224_160

Information

Type transcription factor, rubber biosynthesis
Description TF Family: HSF, Gene Name: Farnesyl diphosphate synthase
Location Contig11224: 90731-97910
Sequence    

Annotation

kegg
ID rcu:RCOM_0523380
description DNA binding protein, putative
nr
ID XP_012071084.1
description PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
swissprot
ID P49351
description Farnesyl pyrophosphate synthase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1
trembl
ID A0A067L5F4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01081 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor a-5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03697: 87584-90126 , PASA_asmbl_03698: 90941-92758 , PASA_asmbl_03699: 92906-94082 , PASA_asmbl_03700: 94209-94842 , PASA_asmbl_03701: 95690-95996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011224_160 0.0 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
2 Hb_000510_340 0.0596249359 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
3 Hb_000347_450 0.0621194274 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
4 Hb_000088_270 0.0674463203 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
5 Hb_003777_290 0.0710245692 - - polypyrimidine tract binding protein, putative [Ricinus communis]
6 Hb_000363_190 0.074306868 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
7 Hb_021576_010 0.077383593 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
8 Hb_001828_180 0.0784140351 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
9 Hb_028960_030 0.0790378723 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
10 Hb_000190_090 0.0796213259 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
11 Hb_000979_220 0.0844740697 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
12 Hb_050847_050 0.0846309987 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
13 Hb_012022_080 0.0848304566 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_002439_010 0.086883714 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
15 Hb_003528_050 0.0879430837 - - protein transporter, putative [Ricinus communis]
16 Hb_011671_270 0.0883117142 - - phosphofructokinase [Hevea brasiliensis]
17 Hb_016347_010 0.0884435567 - - protein transporter, putative [Ricinus communis]
18 Hb_002301_100 0.0901629879 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
19 Hb_001493_150 0.090326995 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
20 Hb_000167_010 0.0914292537 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011224_160 Hb_011224_160 Hb_000510_340 Hb_000510_340 Hb_011224_160--Hb_000510_340 Hb_000347_450 Hb_000347_450 Hb_011224_160--Hb_000347_450 Hb_000088_270 Hb_000088_270 Hb_011224_160--Hb_000088_270 Hb_003777_290 Hb_003777_290 Hb_011224_160--Hb_003777_290 Hb_000363_190 Hb_000363_190 Hb_011224_160--Hb_000363_190 Hb_021576_010 Hb_021576_010 Hb_011224_160--Hb_021576_010 Hb_002439_010 Hb_002439_010 Hb_000510_340--Hb_002439_010 Hb_001828_180 Hb_001828_180 Hb_000510_340--Hb_001828_180 Hb_003528_050 Hb_003528_050 Hb_000510_340--Hb_003528_050 Hb_011671_270 Hb_011671_270 Hb_000510_340--Hb_011671_270 Hb_000979_220 Hb_000979_220 Hb_000510_340--Hb_000979_220 Hb_000347_450--Hb_000088_270 Hb_000684_040 Hb_000684_040 Hb_000347_450--Hb_000684_040 Hb_050847_050 Hb_050847_050 Hb_000347_450--Hb_050847_050 Hb_010775_040 Hb_010775_040 Hb_000347_450--Hb_010775_040 Hb_000183_090 Hb_000183_090 Hb_000347_450--Hb_000183_090 Hb_001019_050 Hb_001019_050 Hb_000088_270--Hb_001019_050 Hb_000008_420 Hb_000008_420 Hb_000088_270--Hb_000008_420 Hb_025336_020 Hb_025336_020 Hb_000088_270--Hb_025336_020 Hb_000088_270--Hb_003777_290 Hb_003777_290--Hb_021576_010 Hb_003777_290--Hb_000979_220 Hb_004096_110 Hb_004096_110 Hb_003777_290--Hb_004096_110 Hb_003777_290--Hb_000363_190 Hb_005489_040 Hb_005489_040 Hb_003777_290--Hb_005489_040 Hb_000363_190--Hb_001828_180 Hb_000663_060 Hb_000663_060 Hb_000363_190--Hb_000663_060 Hb_000409_050 Hb_000409_050 Hb_000363_190--Hb_000409_050 Hb_000398_060 Hb_000398_060 Hb_000363_190--Hb_000398_060 Hb_002232_360 Hb_002232_360 Hb_000363_190--Hb_002232_360 Hb_002301_100 Hb_002301_100 Hb_000363_190--Hb_002301_100 Hb_021576_010--Hb_000979_220 Hb_021576_010--Hb_004096_110 Hb_000327_250 Hb_000327_250 Hb_021576_010--Hb_000327_250 Hb_016347_010 Hb_016347_010 Hb_021576_010--Hb_016347_010 Hb_021576_010--Hb_001828_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15028 4.07064 4.30819 4.08901 2.18153 2.38516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.48278 4.51398 2.72435 8.22779 4.96688

CAGE analysis