Hb_002439_010

Information

Type -
Description -
Location Contig2439: 17749-33407
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16890g
description ubiquitin family protein
nr
ID XP_012078499.1
description PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
swissprot
ID Q2USD7
description DNA damage-inducible protein 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=ddi1 PE=3 SV=2
trembl
ID A0A067KC81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13183 PE=4 SV=1
Gene Ontology
ID GO:0004190
description dna damage-inducible protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25452: 17821-21232 , PASA_asmbl_25454: 25717-26165 , PASA_asmbl_25455: 26414-30827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002439_010 0.0 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
2 Hb_000510_340 0.0620986878 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
3 Hb_000167_010 0.0627371749 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001828_180 0.0698664458 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
5 Hb_004319_080 0.0753958052 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
6 Hb_003883_060 0.0756924364 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
7 Hb_001301_150 0.0760818345 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
8 Hb_000329_800 0.0773249859 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000363_190 0.0799746497 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
10 Hb_163175_010 0.0801867285 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
11 Hb_000663_060 0.080899739 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
12 Hb_002400_340 0.0810841328 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
13 Hb_111036_010 0.0821750157 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
14 Hb_000398_060 0.0823105394 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
15 Hb_002301_100 0.0859547634 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
16 Hb_011224_160 0.086883714 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
17 Hb_010921_050 0.0876833482 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
18 Hb_023001_040 0.0879605589 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
19 Hb_000075_040 0.0885324039 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
20 Hb_005288_130 0.0889714835 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002439_010 Hb_002439_010 Hb_000510_340 Hb_000510_340 Hb_002439_010--Hb_000510_340 Hb_000167_010 Hb_000167_010 Hb_002439_010--Hb_000167_010 Hb_001828_180 Hb_001828_180 Hb_002439_010--Hb_001828_180 Hb_004319_080 Hb_004319_080 Hb_002439_010--Hb_004319_080 Hb_003883_060 Hb_003883_060 Hb_002439_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_002439_010--Hb_001301_150 Hb_011224_160 Hb_011224_160 Hb_000510_340--Hb_011224_160 Hb_000510_340--Hb_001828_180 Hb_003528_050 Hb_003528_050 Hb_000510_340--Hb_003528_050 Hb_011671_270 Hb_011671_270 Hb_000510_340--Hb_011671_270 Hb_000979_220 Hb_000979_220 Hb_000510_340--Hb_000979_220 Hb_003058_120 Hb_003058_120 Hb_000167_010--Hb_003058_120 Hb_000069_720 Hb_000069_720 Hb_000167_010--Hb_000069_720 Hb_000167_010--Hb_003883_060 Hb_000167_010--Hb_001301_150 Hb_023001_040 Hb_023001_040 Hb_000167_010--Hb_023001_040 Hb_000663_060 Hb_000663_060 Hb_001828_180--Hb_000663_060 Hb_000363_190 Hb_000363_190 Hb_001828_180--Hb_000363_190 Hb_000778_010 Hb_000778_010 Hb_001828_180--Hb_000778_010 Hb_001828_180--Hb_023001_040 Hb_002301_100 Hb_002301_100 Hb_001828_180--Hb_002301_100 Hb_000035_470 Hb_000035_470 Hb_004319_080--Hb_000035_470 Hb_000329_800 Hb_000329_800 Hb_004319_080--Hb_000329_800 Hb_004319_080--Hb_001301_150 Hb_001040_100 Hb_001040_100 Hb_004319_080--Hb_001040_100 Hb_004319_080--Hb_003883_060 Hb_000640_170 Hb_000640_170 Hb_004319_080--Hb_000640_170 Hb_003883_060--Hb_001301_150 Hb_013726_090 Hb_013726_090 Hb_003883_060--Hb_013726_090 Hb_004705_170 Hb_004705_170 Hb_003883_060--Hb_004705_170 Hb_000976_140 Hb_000976_140 Hb_003883_060--Hb_000976_140 Hb_003581_200 Hb_003581_200 Hb_003883_060--Hb_003581_200 Hb_000138_100 Hb_000138_100 Hb_001301_150--Hb_000138_100 Hb_001876_050 Hb_001876_050 Hb_001301_150--Hb_001876_050 Hb_001301_150--Hb_000329_800 Hb_183510_020 Hb_183510_020 Hb_001301_150--Hb_183510_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1712 11.1552 21.2647 17.375 9.33209 13.2024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9459 20.2279 10.2059 27.6161 18.2779

CAGE analysis