Hb_003528_050

Information

Type -
Description -
Location Contig3528: 128496-139606
Sequence    

Annotation

kegg
ID rcu:RCOM_0802800
description protein transporter, putative
nr
ID XP_002516559.1
description protein transporter, putative [Ricinus communis]
swissprot
ID Q68FJ8
description TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1
trembl
ID B9RS40
description Protein transporter, putative OS=Ricinus communis GN=RCOM_0802800 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tom1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36628: 128532-139574 , PASA_asmbl_36629: 133471-134029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003528_050 0.0 - - protein transporter, putative [Ricinus communis]
2 Hb_000979_220 0.0586760488 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
3 Hb_027506_010 0.0705016766 - - PREDICTED: cullin-4 [Jatropha curcas]
4 Hb_011883_020 0.0752730051 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
5 Hb_000510_340 0.0753300555 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
6 Hb_000173_190 0.0766975148 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001300_280 0.0775575336 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
8 Hb_001157_160 0.0780494775 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
9 Hb_003777_290 0.0784133518 - - polypyrimidine tract binding protein, putative [Ricinus communis]
10 Hb_001009_280 0.0789965964 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
11 Hb_006588_060 0.0792918703 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
12 Hb_000270_170 0.0804881978 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
13 Hb_000510_360 0.0812801493 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
14 Hb_006189_020 0.0822881323 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
15 Hb_000490_060 0.0826826626 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
16 Hb_001635_110 0.0827502887 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
17 Hb_000676_330 0.0828292699 - - protein with unknown function [Ricinus communis]
18 Hb_003228_110 0.083251053 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
19 Hb_000206_160 0.0841803589 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
20 Hb_000565_040 0.0841869407 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]

Gene co-expression network

sample Hb_003528_050 Hb_003528_050 Hb_000979_220 Hb_000979_220 Hb_003528_050--Hb_000979_220 Hb_027506_010 Hb_027506_010 Hb_003528_050--Hb_027506_010 Hb_011883_020 Hb_011883_020 Hb_003528_050--Hb_011883_020 Hb_000510_340 Hb_000510_340 Hb_003528_050--Hb_000510_340 Hb_000173_190 Hb_000173_190 Hb_003528_050--Hb_000173_190 Hb_001300_280 Hb_001300_280 Hb_003528_050--Hb_001300_280 Hb_021576_010 Hb_021576_010 Hb_000979_220--Hb_021576_010 Hb_003777_290 Hb_003777_290 Hb_000979_220--Hb_003777_290 Hb_000979_220--Hb_027506_010 Hb_004096_110 Hb_004096_110 Hb_000979_220--Hb_004096_110 Hb_002046_010 Hb_002046_010 Hb_000979_220--Hb_002046_010 Hb_060980_010 Hb_060980_010 Hb_027506_010--Hb_060980_010 Hb_016172_030 Hb_016172_030 Hb_027506_010--Hb_016172_030 Hb_000206_160 Hb_000206_160 Hb_027506_010--Hb_000206_160 Hb_003758_010 Hb_003758_010 Hb_027506_010--Hb_003758_010 Hb_000409_050 Hb_000409_050 Hb_027506_010--Hb_000409_050 Hb_065500_020 Hb_065500_020 Hb_027506_010--Hb_065500_020 Hb_005074_020 Hb_005074_020 Hb_011883_020--Hb_005074_020 Hb_002631_210 Hb_002631_210 Hb_011883_020--Hb_002631_210 Hb_011883_020--Hb_027506_010 Hb_004208_050 Hb_004208_050 Hb_011883_020--Hb_004208_050 Hb_011883_020--Hb_004096_110 Hb_001691_200 Hb_001691_200 Hb_011883_020--Hb_001691_200 Hb_011224_160 Hb_011224_160 Hb_000510_340--Hb_011224_160 Hb_002439_010 Hb_002439_010 Hb_000510_340--Hb_002439_010 Hb_001828_180 Hb_001828_180 Hb_000510_340--Hb_001828_180 Hb_011671_270 Hb_011671_270 Hb_000510_340--Hb_011671_270 Hb_000510_340--Hb_000979_220 Hb_001635_110 Hb_001635_110 Hb_000173_190--Hb_001635_110 Hb_006100_020 Hb_006100_020 Hb_000173_190--Hb_006100_020 Hb_000318_150 Hb_000318_150 Hb_000173_190--Hb_000318_150 Hb_000173_190--Hb_001300_280 Hb_000035_100 Hb_000035_100 Hb_000173_190--Hb_000035_100 Hb_000960_080 Hb_000960_080 Hb_000173_190--Hb_000960_080 Hb_001300_280--Hb_001635_110 Hb_178968_060 Hb_178968_060 Hb_001300_280--Hb_178968_060 Hb_003636_080 Hb_003636_080 Hb_001300_280--Hb_003636_080 Hb_006588_060 Hb_006588_060 Hb_001300_280--Hb_006588_060 Hb_012092_050 Hb_012092_050 Hb_001300_280--Hb_012092_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.17532 12.5959 12.1733 8.27523 6.50964 4.923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.21851 8.08695 7.18771 14.6837 11.2786

CAGE analysis