Hb_005074_020

Information

Type -
Description -
Location Contig5074: 14118-21209
Sequence    

Annotation

kegg
ID rcu:RCOM_0996070
description nucleotide binding protein, putative
nr
ID XP_012085199.1
description PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
swissprot
ID A2AH22
description Activating molecule in BECN1-regulated autophagy protein 1 OS=Mus musculus GN=Ambra1 PE=1 SV=1
trembl
ID A0A067K2E8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17603 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46168: 14120-21037 , PASA_asmbl_46169: 14170-16615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005074_020 0.0 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
2 Hb_011883_020 0.0534425208 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
3 Hb_000080_110 0.0571614462 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
4 Hb_027760_060 0.0680205386 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
5 Hb_009615_160 0.0686902212 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
6 Hb_002276_040 0.0699167945 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
7 Hb_011925_020 0.0705651367 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_002631_210 0.0720451687 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
9 Hb_000049_250 0.0729730359 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
10 Hb_001511_180 0.0732222839 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
11 Hb_000318_150 0.0748733671 - - RNA-binding protein Nova-1, putative [Ricinus communis]
12 Hb_033799_010 0.0759674421 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
13 Hb_019280_010 0.0774453319 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
14 Hb_006478_030 0.07751206 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
15 Hb_002686_140 0.078839432 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
16 Hb_060980_010 0.0792191009 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
17 Hb_000890_070 0.0793439894 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
18 Hb_001167_050 0.0807388068 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
19 Hb_000059_240 0.0807907505 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
20 Hb_007245_020 0.0811469288 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_005074_020 Hb_005074_020 Hb_011883_020 Hb_011883_020 Hb_005074_020--Hb_011883_020 Hb_000080_110 Hb_000080_110 Hb_005074_020--Hb_000080_110 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_009615_160 Hb_009615_160 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_011925_020 Hb_011925_020 Hb_005074_020--Hb_011925_020 Hb_002631_210 Hb_002631_210 Hb_011883_020--Hb_002631_210 Hb_027506_010 Hb_027506_010 Hb_011883_020--Hb_027506_010 Hb_004208_050 Hb_004208_050 Hb_011883_020--Hb_004208_050 Hb_004096_110 Hb_004096_110 Hb_011883_020--Hb_004096_110 Hb_001691_200 Hb_001691_200 Hb_011883_020--Hb_001691_200 Hb_000321_090 Hb_000321_090 Hb_000080_110--Hb_000321_090 Hb_033799_010 Hb_033799_010 Hb_000080_110--Hb_033799_010 Hb_000049_250 Hb_000049_250 Hb_000080_110--Hb_000049_250 Hb_000080_110--Hb_011925_020 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030 Hb_000029_170 Hb_000029_170 Hb_027760_060--Hb_000029_170 Hb_002317_010 Hb_002317_010 Hb_027760_060--Hb_002317_010 Hb_008289_040 Hb_008289_040 Hb_027760_060--Hb_008289_040 Hb_001646_020 Hb_001646_020 Hb_027760_060--Hb_001646_020 Hb_002445_030 Hb_002445_030 Hb_027760_060--Hb_002445_030 Hb_001329_200 Hb_001329_200 Hb_009615_160--Hb_001329_200 Hb_016172_030 Hb_016172_030 Hb_009615_160--Hb_016172_030 Hb_021165_010 Hb_021165_010 Hb_009615_160--Hb_021165_010 Hb_060980_010 Hb_060980_010 Hb_009615_160--Hb_060980_010 Hb_024650_080 Hb_024650_080 Hb_009615_160--Hb_024650_080 Hb_002686_140 Hb_002686_140 Hb_002276_040--Hb_002686_140 Hb_002276_040--Hb_000080_110 Hb_002276_040--Hb_009615_160 Hb_002276_040--Hb_011883_020 Hb_002276_040--Hb_001329_200 Hb_011925_020--Hb_000049_250 Hb_000271_120 Hb_000271_120 Hb_011925_020--Hb_000271_120 Hb_011925_020--Hb_000321_090 Hb_005181_050 Hb_005181_050 Hb_011925_020--Hb_005181_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.98616 17.3326 13.1766 15.8478 6.76248 8.16817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6664 5.87639 9.85074 21.836 14.4798

CAGE analysis