Hb_033799_010

Information

Type -
Description -
Location Contig33799: 4735-14786
Sequence    

Annotation

kegg
ID rcu:RCOM_0921600
description nucleic acid binding protein, putative
nr
ID XP_012076441.1
description PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
swissprot
ID Q5U241
description Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2
trembl
ID A0A067KNY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07095 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nucleic acid binding isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35380: 8283-9635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033799_010 0.0 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
2 Hb_000080_110 0.0659559702 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
3 Hb_171554_040 0.0669825422 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
4 Hb_001511_180 0.0719472101 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
5 Hb_000049_250 0.0729133508 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
6 Hb_007245_020 0.0748725821 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
7 Hb_005074_020 0.0759674421 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
8 Hb_004884_090 0.0797669376 - - importin beta-1, putative [Ricinus communis]
9 Hb_002027_190 0.0802666148 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
10 Hb_006478_030 0.0803920467 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
11 Hb_005181_050 0.0822764734 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
12 Hb_000321_090 0.0835747439 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
13 Hb_000890_070 0.0843921926 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
14 Hb_000574_530 0.0847584574 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
15 Hb_001167_050 0.0850622553 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
16 Hb_001124_050 0.085402394 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
17 Hb_001691_200 0.0873114396 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
18 Hb_000170_100 0.0874541859 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
19 Hb_003124_270 0.087504444 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
20 Hb_007012_040 0.0878991667 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]

Gene co-expression network

sample Hb_033799_010 Hb_033799_010 Hb_000080_110 Hb_000080_110 Hb_033799_010--Hb_000080_110 Hb_171554_040 Hb_171554_040 Hb_033799_010--Hb_171554_040 Hb_001511_180 Hb_001511_180 Hb_033799_010--Hb_001511_180 Hb_000049_250 Hb_000049_250 Hb_033799_010--Hb_000049_250 Hb_007245_020 Hb_007245_020 Hb_033799_010--Hb_007245_020 Hb_005074_020 Hb_005074_020 Hb_033799_010--Hb_005074_020 Hb_000321_090 Hb_000321_090 Hb_000080_110--Hb_000321_090 Hb_000080_110--Hb_005074_020 Hb_000080_110--Hb_000049_250 Hb_011925_020 Hb_011925_020 Hb_000080_110--Hb_011925_020 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030 Hb_001124_050 Hb_001124_050 Hb_171554_040--Hb_001124_050 Hb_000574_530 Hb_000574_530 Hb_171554_040--Hb_000574_530 Hb_007012_040 Hb_007012_040 Hb_171554_040--Hb_007012_040 Hb_005408_030 Hb_005408_030 Hb_171554_040--Hb_005408_030 Hb_000170_100 Hb_000170_100 Hb_171554_040--Hb_000170_100 Hb_009476_120 Hb_009476_120 Hb_001511_180--Hb_009476_120 Hb_002817_060 Hb_002817_060 Hb_001511_180--Hb_002817_060 Hb_001511_180--Hb_005074_020 Hb_000890_070 Hb_000890_070 Hb_001511_180--Hb_000890_070 Hb_000347_300 Hb_000347_300 Hb_001511_180--Hb_000347_300 Hb_000049_250--Hb_011925_020 Hb_000049_250--Hb_000321_090 Hb_000049_250--Hb_005074_020 Hb_000220_120 Hb_000220_120 Hb_000049_250--Hb_000220_120 Hb_002357_070 Hb_002357_070 Hb_007245_020--Hb_002357_070 Hb_123531_010 Hb_123531_010 Hb_007245_020--Hb_123531_010 Hb_007245_020--Hb_006478_030 Hb_000172_340 Hb_000172_340 Hb_007245_020--Hb_000172_340 Hb_060980_010 Hb_060980_010 Hb_007245_020--Hb_060980_010 Hb_000103_290 Hb_000103_290 Hb_007245_020--Hb_000103_290 Hb_011883_020 Hb_011883_020 Hb_005074_020--Hb_011883_020 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_009615_160 Hb_009615_160 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_005074_020--Hb_011925_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45611 15.2556 7.95557 11.1571 5.61722 7.44665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85493 4.49177 6.42922 16.1895 14.3111

CAGE analysis