Hb_171554_040

Information

Type -
Description -
Location Contig171554: 41765-42791
Sequence    

Annotation

kegg
ID rcu:RCOM_0843770
description phytanoyl-CoA dioxygenase domain containing, putative
nr
ID XP_011019374.1
description PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
swissprot
ID Q9ZVF6
description Phytanoyl-CoA dioxygenase OS=Arabidopsis thaliana GN=PAHX PE=2 SV=2
trembl
ID B9SJ62
description Phytanoyl-CoA dioxygenase domain containing, putative OS=Ricinus communis GN=RCOM_0843770 PE=4 SV=1
Gene Ontology
ID GO:0016787
description phytanoyl- dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171554_040 0.0 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
2 Hb_033799_010 0.0669825422 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
3 Hb_001124_050 0.0724037501 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
4 Hb_000574_530 0.0762847666 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
5 Hb_007012_040 0.0778644659 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
6 Hb_005408_030 0.0851410042 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
7 Hb_000170_100 0.0857108925 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
8 Hb_002609_080 0.0862525538 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
9 Hb_002521_020 0.0873963492 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
10 Hb_023344_160 0.0891090882 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
11 Hb_003124_270 0.0929913142 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
12 Hb_005186_040 0.0942840418 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
13 Hb_001377_100 0.0953175627 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
14 Hb_006531_020 0.0960200849 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
15 Hb_010180_060 0.0969066582 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
16 Hb_007632_010 0.0971471674 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
17 Hb_123531_010 0.0973315728 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
18 Hb_002631_210 0.0985362351 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
19 Hb_011021_050 0.0991881852 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
20 Hb_005181_050 0.0994580475 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_171554_040 Hb_171554_040 Hb_033799_010 Hb_033799_010 Hb_171554_040--Hb_033799_010 Hb_001124_050 Hb_001124_050 Hb_171554_040--Hb_001124_050 Hb_000574_530 Hb_000574_530 Hb_171554_040--Hb_000574_530 Hb_007012_040 Hb_007012_040 Hb_171554_040--Hb_007012_040 Hb_005408_030 Hb_005408_030 Hb_171554_040--Hb_005408_030 Hb_000170_100 Hb_000170_100 Hb_171554_040--Hb_000170_100 Hb_000080_110 Hb_000080_110 Hb_033799_010--Hb_000080_110 Hb_001511_180 Hb_001511_180 Hb_033799_010--Hb_001511_180 Hb_000049_250 Hb_000049_250 Hb_033799_010--Hb_000049_250 Hb_007245_020 Hb_007245_020 Hb_033799_010--Hb_007245_020 Hb_005074_020 Hb_005074_020 Hb_033799_010--Hb_005074_020 Hb_009486_170 Hb_009486_170 Hb_001124_050--Hb_009486_170 Hb_009486_090 Hb_009486_090 Hb_001124_050--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_001124_050--Hb_002521_020 Hb_006031_010 Hb_006031_010 Hb_001124_050--Hb_006031_010 Hb_001133_030 Hb_001133_030 Hb_001124_050--Hb_001133_030 Hb_001951_170 Hb_001951_170 Hb_001124_050--Hb_001951_170 Hb_007632_010 Hb_007632_010 Hb_000574_530--Hb_007632_010 Hb_000574_530--Hb_001124_050 Hb_006531_020 Hb_006531_020 Hb_000574_530--Hb_006531_020 Hb_000574_530--Hb_009486_090 Hb_000574_530--Hb_002521_020 Hb_003124_270 Hb_003124_270 Hb_007012_040--Hb_003124_270 Hb_004884_090 Hb_004884_090 Hb_007012_040--Hb_004884_090 Hb_000154_130 Hb_000154_130 Hb_007012_040--Hb_000154_130 Hb_004551_020 Hb_004551_020 Hb_007012_040--Hb_004551_020 Hb_000445_130 Hb_000445_130 Hb_007012_040--Hb_000445_130 Hb_000009_410 Hb_000009_410 Hb_005408_030--Hb_000009_410 Hb_001648_020 Hb_001648_020 Hb_005408_030--Hb_001648_020 Hb_005408_030--Hb_001951_170 Hb_005186_040 Hb_005186_040 Hb_005408_030--Hb_005186_040 Hb_011021_050 Hb_011021_050 Hb_005408_030--Hb_011021_050 Hb_000934_210 Hb_000934_210 Hb_005408_030--Hb_000934_210 Hb_003604_050 Hb_003604_050 Hb_000170_100--Hb_003604_050 Hb_012490_010 Hb_012490_010 Hb_000170_100--Hb_012490_010 Hb_000170_100--Hb_001951_170 Hb_000428_030 Hb_000428_030 Hb_000170_100--Hb_000428_030 Hb_000200_110 Hb_000200_110 Hb_000170_100--Hb_000200_110 Hb_001341_160 Hb_001341_160 Hb_000170_100--Hb_001341_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.31502 1.5046 0.514544 0.964541 0.619334 0.540848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.251585 0.445128 0.62922 1.21899 1.4969

CAGE analysis